{ "type": "genome", "identifier": "GCA_018883865.1", "organism": "Candidatus Oceanisphaera merdipullorum", "title": "Candidatus Oceanisphaera merdipullorum", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "Quadram Institutte", "publication": [ {} ], "properties": { "assembly_accession": "GCA_018883865.1", "bioproject": "PRJNA543206", "biosample": "SAMN15816797", "wgs_master": "JAHLFI000000000.1", "refseq_category": "na", "taxid": "2838705", "species_taxid": "2838705", "organism_name": "Candidatus Oceanisphaera merdipullorum", "infraspecific_name": "", "isolate": "819", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/06/14", "asm_name": "ASM1888386v1", "submitter": "Quadram Institutte", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/883/865/GCA_018883865.1_ASM1888386v1", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-06-14", "dateModified": "2021-06-14", "datePublished": "2021-06-14", "_annotation": { "sample_count": 1, "sample_organism": [ "Candidatus Oceanisphaera merdipullorum" ], "sample_taxid": [ "2838705" ], "sample_host_organism": [ "Gallus gallus" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "United Kingdom: University of Surrey, Guildford" ], "sample_host_location_id": [], "data_size": "0.833 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 62.5, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2892060", "Number of Sequences": "165", "Longest Sequences (bp)": "71025", "N50 (bp)": "27802", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "50.2", "Number of CDSs": "2507", "Average Protein Length": "309.7", "Coding Ratio (%)": "80.5", "Number of rRNAs": "0", "Number of tRNAs": "51", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Oceanisphaera profunda", "strain": "strain=SM1222", "accession": "GCA_002157895.1", "taxid": 1416627, "species_taxid": 1416627, "relation_to_type": "type", "validated": true, "ani": 83.5039, "matched_fragments": 647, "total_fragments": 883, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oceanisphaera avium", "strain": "strain=AMac2203", "accession": "GCA_002157875.1", "taxid": 1903694, "species_taxid": 1903694, "relation_to_type": "type", "validated": true, "ani": 80.0252, "matched_fragments": 449, "total_fragments": 883, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oceanisphaera marina", "strain": "strain=CGMCC 1.15923", "accession": "GCA_014643915.1", "taxid": 2017550, "species_taxid": 2017550, "relation_to_type": "type", "validated": true, "ani": 78.9704, "matched_fragments": 397, "total_fragments": 883, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oceanisphaera pacifica", "strain": "strain=DM8", "accession": "GCA_017498065.1", "taxid": 2818389, "species_taxid": 2818389, "relation_to_type": "type", "validated": true, "ani": 78.5545, "matched_fragments": 340, "total_fragments": 883, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oceanisphaera arctica", "strain": "strain=KCTC 23013", "accession": "GCA_014652055.1", "taxid": 641510, "species_taxid": 641510, "relation_to_type": "type", "validated": true, "ani": 78.296, "matched_fragments": 276, "total_fragments": 883, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oceanisphaera arctica", "strain": "strain=V1-41", "accession": "GCA_002936955.1", "taxid": 641510, "species_taxid": 641510, "relation_to_type": "type", "validated": true, "ani": 78.2708, "matched_fragments": 266, "total_fragments": 883, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oceanisphaera litoralis", "strain": "strain=DSM 15406", "accession": "GCA_016907015.1", "taxid": 225144, "species_taxid": 225144, "relation_to_type": "type", "validated": true, "ani": 77.9402, "matched_fragments": 254, "total_fragments": 883, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oceanisphaera psychrotolerans", "strain": "strain=LAM-WHM-ZC", "accession": "GCA_001870485.1", "taxid": 1414654, "species_taxid": 1414654, "relation_to_type": "type", "validated": true, "ani": 77.6814, "matched_fragments": 235, "total_fragments": 883, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oceanimonas doudoroffii", "strain": "strain=ATCC 27123", "accession": "GCA_002242685.1", "taxid": 84158, "species_taxid": 84158, "relation_to_type": "type", "validated": true, "ani": 76.7907, "matched_fragments": 177, "total_fragments": 883, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oceanimonas baumannii", "strain": "strain=ATCC 700832", "accession": "GCA_002245495.1", "taxid": 129578, "species_taxid": 129578, "relation_to_type": "type", "validated": true, "ani": 76.7305, "matched_fragments": 165, "total_fragments": 883, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oceanimonas baumannii", "strain": "strain=DSM 15594", "accession": "GCA_004365405.1", "taxid": 129578, "species_taxid": 129578, "relation_to_type": "type", "validated": true, "ani": 76.697, "matched_fragments": 167, "total_fragments": 883, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 62.5, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_018883865.1", "gtdb_species": "s__Oceanisphaera 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