{
    "type": "genome",
    "identifier": "GCA_018883965.1",
    "organism": "Candidatus Phocaeicola merdigallinarum",
    "title": "Candidatus Phocaeicola merdigallinarum",
    "description": "derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "Quadram Institutte",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_018883965.1",
        "bioproject": "PRJNA543206",
        "biosample": "SAMN15816829",
        "wgs_master": "JAHLFC000000000.1",
        "refseq_category": "na",
        "taxid": "2838737",
        "species_taxid": "2838737",
        "organism_name": "Candidatus Phocaeicola merdigallinarum",
        "infraspecific_name": "",
        "isolate": "17689",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2021/06/14",
        "asm_name": "ASM1888396v1",
        "submitter": "Quadram Institutte",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/883/965/GCA_018883965.1_ASM1888396v1",
        "excluded_from_refseq": "derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2021-06-14",
    "dateModified": "2021-06-14",
    "datePublished": "2021-06-14",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Candidatus Phocaeicola merdigallinarum"
        ],
        "sample_taxid": [
            "2838737"
        ],
        "sample_host_organism": [
            "Gallus gallus"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "United Kingdom: University of Surrey, Guildford"
        ],
        "sample_host_location_id": [],
        "data_size": "0.946 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 66.67,
        "contamination": 4.17,
        "strain_heterogeneity": 100.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "3292604",
        "Number of Sequences": "131",
        "Longest Sequences (bp)": "162358",
        "N50 (bp)": "40615",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "46.2",
        "Number of CDSs": "2527",
        "Average Protein Length": "379.7",
        "Coding Ratio (%)": "87.4",
        "Number of rRNAs": "1",
        "Number of tRNAs": "63",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "accession": "GCA_000187895.1",
                "taxid": 310297,
                "species_taxid": 310297,
                "relation_to_type": "suspected-type",
                "validated": true,
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                "matched_fragments": 651,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Phocaeicola barnesiae",
                "strain": "strain=DSM 18169",
                "accession": "GCA_000374585.1",
                "taxid": 376804,
                "species_taxid": 376804,
                "relation_to_type": "type",
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                "ani": 79.4797,
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                "ani_threshold": 95,
                "status": "below_threshold"
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            {
                "organism_name": "Phocaeicola barnesiae",
                "strain": "strain=JCM 13652",
                "accession": "GCA_000613645.1",
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                "species_taxid": 376804,
                "relation_to_type": "type",
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                "ani": 79.3826,
                "matched_fragments": 341,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Phocaeicola faecicola",
                "strain": "strain=AGMB03916",
                "accession": "GCA_013618865.1",
                "taxid": 2739389,
                "species_taxid": 2739389,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.3172,
                "matched_fragments": 314,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Phocaeicola coprophilus",
                "strain": "strain=JCM 13818",
                "accession": "GCA_001315785.1",
                "taxid": 387090,
                "species_taxid": 387090,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.9903,
                "matched_fragments": 282,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Phocaeicola coprophilus",
                "strain": "strain=DSM 18228",
                "accession": "GCA_000157915.1",
                "taxid": 387090,
                "species_taxid": 387090,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.9412,
                "matched_fragments": 278,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Phocaeicola salanitronis",
                "strain": "strain=DSM 18170",
                "accession": "GCA_000190575.1",
                "taxid": 376805,
                "species_taxid": 376805,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.6309,
                "matched_fragments": 242,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Phocaeicola faecium",
                "strain": "strain=Sa1YUN3",
                "accession": "GCA_014837055.1",
                "taxid": 2762213,
                "species_taxid": 2762213,
                "relation_to_type": "type",
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                "ani": 78.4763,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Phocaeicola intestinalis",
                "strain": "strain=Sa1CVN1",
                "accession": "GCA_014837065.1",
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                "species_taxid": 2762212,
                "relation_to_type": "type",
                "validated": true,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Phocaeicola faecalis",
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                "relation_to_type": "type",
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                "ani": 77.6532,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bacteroides stercoris",
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                "ani": 77.5384,
                "matched_fragments": 123,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bacteroides humanifaecis",
                "strain": "strain=KGMB07931",
                "accession": "GCA_017309675.2",
                "taxid": 2792859,
                "species_taxid": 2792859,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.3419,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Phocaeicola vulgatus",
                "strain": "strain=FDAARGOS_1098",
                "accession": "GCA_016766915.1",
                "taxid": 821,
                "species_taxid": 821,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.2835,
                "matched_fragments": 165,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Phocaeicola vulgatus",
                "strain": "strain=ATCC 8482",
                "accession": "GCA_000012825.1",
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                "species_taxid": 821,
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                "validated": true,
                "ani": 77.248,
                "matched_fragments": 167,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bacteroides propionicigenes",
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                "accession": "GCA_018390535.1",
                "taxid": 2834112,
                "species_taxid": 2834112,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.1631,
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                "status": "below_threshold"
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            {
                "organism_name": "Bacteroides stercorirosoris",
                "strain": "strain=JCM 17103",
                "accession": "GCA_000614165.1",
                "taxid": 871324,
                "species_taxid": 871324,
                "relation_to_type": "type",
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                "ani": 77.1158,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bacteroides gallinarum",
                "strain": "strain=JCM 13658",
                "accession": "GCA_000613665.1",
                "taxid": 376806,
                "species_taxid": 376806,
                "relation_to_type": "type",
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                "ani": 77.027,
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                "status": "below_threshold"
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            {
                "organism_name": "Bacteroides gallinarum",
                "strain": "strain=DSM 18171",
                "accession": "GCA_000374365.1",
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                "relation_to_type": "type",
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                "ani": 76.956,
                "matched_fragments": 121,
                "total_fragments": 1037,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
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                "mean_intra_species_ani": "N/A",
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    ],
    "_genome_taxon": [
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        "merdigallinarum",
        "d__Bacteria",
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        "c__Bacteroidia",
        "o__Bacteroidales",
        "f__Bacteroidaceae",
        "g__Phocaeicola",
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        "Bacteria",
        "Bacteroidota",
        "Bacteroidia",
        "Bacteroidales",
        "Bacteroidaceae",
        "Phocaeicola",
        "Phocaeicola",
        "fibrisolvens"
    ],
    "_meo": [
        {
            "id": "MEO_0000054",
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        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}