{ "type": "genome", "identifier": "GCA_018895535.1", "organism": "Bacillota bacterium", "title": "Bacillota bacterium", "description": "derived from metagenome; fragmented assembly; genus undefined", "data type": "Genome sequencing and assembly", "organization": "Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University", "publication": [ {} ], "properties": { "assembly_accession": "GCA_018895535.1", "bioproject": "PRJNA627556", "biosample": "SAMN19297666", "wgs_master": "JAHIOH000000000.1", "refseq_category": "na", "taxid": "1879010", "species_taxid": "1879010", "organism_name": "Bacillota bacterium", "infraspecific_name": "", "isolate": "KR13_S3.mb.122", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/06/16", "asm_name": "ASM1889553v1", "submitter": "Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/895/535/GCA_018895535.1_ASM1889553v1", "excluded_from_refseq": "derived from metagenome; fragmented assembly; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-06-16", "dateModified": "2021-06-16", "datePublished": "2021-06-16", "_annotation": { "sample_count": 1, "sample_organism": [ "Bacillota bacterium" ], "sample_taxid": [ "1879010" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Finland" ], "sample_host_location_id": [], "data_size": "0.829 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 55.3, "contamination": 0.46, "strain_heterogeneity": 0.0, "genome_count": 1 }, 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95, "status": "below_threshold" }, { "organism_name": "Acetobacterium bakii", "strain": "strain=DSM 8239", "accession": "GCA_001263355.1", "taxid": 52689, "species_taxid": 52689, "relation_to_type": "type", "validated": true, "ani": 78.3134, "matched_fragments": 186, "total_fragments": 609, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 55.3, "contamination": 0.46, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_016213825.1", "gtdb_species": "s__Acetobacterium woodii_A", "ani": 91.9374, "matched_fragments": 525, "total_fragments": 609, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Eubacteriales;f__Eubacteriaceae;g__Acetobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000472665.1", "gtdb_species": "s__Acetobacterium 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