{
    "type": "genome",
    "identifier": "GCA_018896435.1",
    "organism": "Pseudomonadota bacterium",
    "title": "Pseudomonadota bacterium",
    "description": "derived from metagenome; genus undefined",
    "data type": "Genome sequencing and assembly",
    "organization": "Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_018896435.1",
        "bioproject": "PRJNA627556",
        "biosample": "SAMN19297616",
        "wgs_master": "JAHIMJ000000000.1",
        "refseq_category": "na",
        "taxid": "1977087",
        "species_taxid": "1977087",
        "organism_name": "Pseudomonadota bacterium",
        "infraspecific_name": "",
        "isolate": "KR13_N2.mb.62",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2021/06/16",
        "asm_name": "ASM1889643v1",
        "submitter": "Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/896/435/GCA_018896435.1_ASM1889643v1",
        "excluded_from_refseq": "derived from metagenome; genus undefined",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2021-06-16",
    "dateModified": "2021-06-16",
    "datePublished": "2021-06-16",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Pseudomonadota bacterium"
        ],
        "sample_taxid": [
            "1977087"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Finland"
        ],
        "sample_host_location_id": [],
        "data_size": "1.163 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 86.57,
        "contamination": 5.3,
        "strain_heterogeneity": 75.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "4078083",
        "Number of Sequences": "643",
        "Longest Sequences (bp)": "33850",
        "N50 (bp)": "8054",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "57.9",
        "Number of CDSs": "3382",
        "Average Protein Length": "268.4",
        "Coding Ratio (%)": "66.8",
        "Number of rRNAs": "3",
        "Number of tRNAs": "48",
        "Number of CRISPRs": "4"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Desulfobacca acetoxidans",
                "strain": "strain=DSM 11109",
                "accession": "GCA_000195295.1",
                "taxid": 60893,
                "species_taxid": 60893,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 68,
                "total_fragments": 1010,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Dissulfurirhabdus thermomarina",
                "strain": "strain=DSM 100025",
                "accession": "GCA_010499435.1",
                "taxid": 1765737,
                "species_taxid": 1765737,
                "relation_to_type": "type",
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                "ani": 75.8833,
                "matched_fragments": 62,
                "total_fragments": 1010,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Dissulfurirhabdus thermomarina",
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                "accession": "GCA_012979235.1",
                "taxid": 1765737,
                "species_taxid": 1765737,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.8005,
                "matched_fragments": 66,
                "total_fragments": 1010,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Desulfacinum infernum",
                "strain": "strain=DSM 9756",
                "accession": "GCA_900129305.1",
                "taxid": 35837,
                "species_taxid": 35837,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.3202,
                "matched_fragments": 57,
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                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 86.57,
            "contamination": 5.3,
            "strain_heterogeneity": 75.0
        },
        "gtdb_result": [
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                "accession": "GCA_018897875.1",
                "gtdb_species": "s__0-14-0-80-60-11 sp018897875",
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                "matched_fragments": 815,
                "total_fragments": 1010,
                "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Desulfobaccia;o__Desulfobaccales;f__0-14-0-80-60-11;g__0-14-0-80-60-11",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.10",
                "min_intra_species_ani": "99.10",
                "mean_intra_species_af": "0.81",
                "min_intra_species_af": "0.81",
                "num_clustered_genomes": 2,
                "status": "conclusive"
            },
            {
                "accession": "GCA_002779455.1",
                "gtdb_species": "s__0-14-0-80-60-11 sp002779455",
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                "matched_fragments": 483,
                "total_fragments": 1010,
                "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Desulfobaccia;o__Desulfobaccales;f__0-14-0-80-60-11;g__0-14-0-80-60-11",
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_016875015.1",
                "gtdb_species": "s__0-14-0-80-60-11 sp016875015",
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                "matched_fragments": 603,
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                "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Desulfobaccia;o__Desulfobaccales;f__0-14-0-80-60-11;g__0-14-0-80-60-11",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_016874915.1",
                "gtdb_species": "s__0-14-0-80-60-11 sp016874915",
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                "matched_fragments": 331,
                "total_fragments": 1010,
                "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Desulfobaccia;o__Desulfobaccales;f__0-14-0-80-60-11;g__0-14-0-80-60-11",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_016208235.1",
                "gtdb_species": "s__SURF-52 sp016208235",
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                "matched_fragments": 326,
                "total_fragments": 1010,
                "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Desulfobaccia;o__Desulfobaccales;f__0-14-0-80-60-11;g__SURF-52",
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                "mean_intra_species_ani": "98.97",
                "min_intra_species_ani": "98.97",
                "mean_intra_species_af": "0.86",
                "min_intra_species_af": "0.86",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_016874975.1",
                "gtdb_species": "s__VGSQ01 sp016874975",
                "ani": 78.5171,
                "matched_fragments": 287,
                "total_fragments": 1010,
                "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Desulfobaccia;o__Desulfobaccales;f__0-14-0-80-60-11;g__VGSQ01",
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_016874945.1",
                "gtdb_species": "s__0-14-0-80-60-11 sp016874945",
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                "matched_fragments": 279,
                "total_fragments": 1010,
                "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Desulfobaccia;o__Desulfobaccales;f__0-14-0-80-60-11;g__0-14-0-80-60-11",
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_003599195.1",
                "gtdb_species": "s__SURF-52 sp003599195",
                "ani": 78.1612,
                "matched_fragments": 284,
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                "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Desulfobaccia;o__Desulfobaccales;f__0-14-0-80-60-11;g__SURF-52",
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Desulfobacterota",
        "c__Desulfobaccia",
        "o__Desulfobaccales",
        "f__0-14-0-80-60-11",
        "g__0-14-0-80-60-11",
        "s__0-14-0-80-60-11 sp018897875"
    ],
    "_genome_taxon": [
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        "bacterium",
        "d__Bacteria",
        "p__Desulfobacterota",
        "c__Desulfobaccia",
        "o__Desulfobaccales",
        "f__0-14-0-80-60-11",
        "g__0-14-0-80-60-11",
        "s__0-14-0-80-60-11 sp018897875",
        "Bacteria",
        "Desulfobacterota",
        "Desulfobaccia",
        "Desulfobaccales",
        "0-14-0-80-60-11",
        "0-14-0-80-60-11",
        "0-14-0-80-60-11",
        "sp018897875"
    ],
    "_meo": [
        {
            "id": "MEO_0000366",
            "label": "ground water"
        }
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}