{
    "type": "genome",
    "identifier": "GCA_018897495.1",
    "organism": "Pseudomonadota bacterium",
    "title": "Pseudomonadota bacterium",
    "description": "derived from metagenome; genus undefined",
    "data type": "Genome sequencing and assembly",
    "organization": "Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_018897495.1",
        "bioproject": "PRJNA627556",
        "biosample": "SAMN19297558",
        "wgs_master": "JAHIKD000000000.1",
        "refseq_category": "na",
        "taxid": "1977087",
        "species_taxid": "1977087",
        "organism_name": "Pseudomonadota bacterium",
        "infraspecific_name": "",
        "isolate": "KR13_N1.mb.35",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2021/06/16",
        "asm_name": "ASM1889749v1",
        "submitter": "Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/897/495/GCA_018897495.1_ASM1889749v1",
        "excluded_from_refseq": "derived from metagenome; genus undefined",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2021-06-16",
    "dateModified": "2021-06-16",
    "datePublished": "2021-06-16",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Pseudomonadota bacterium"
        ],
        "sample_taxid": [
            "1977087"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Finland"
        ],
        "sample_host_location_id": [],
        "data_size": "0.657 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 82.29,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "2309938",
        "Number of Sequences": "272",
        "Longest Sequences (bp)": "55425",
        "N50 (bp)": "11858",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "57.5",
        "Number of CDSs": "1888",
        "Average Protein Length": "308.4",
        "Coding Ratio (%)": "75.6",
        "Number of rRNAs": "0",
        "Number of tRNAs": "35",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Desulfurivibrio alkaliphilus",
                "strain": "strain=AHT 2",
                "accession": "GCA_000092205.1",
                "taxid": 427923,
                "species_taxid": 427923,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.2384,
                "matched_fragments": 117,
                "total_fragments": 625,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Desulfobulbus elongatus",
                "strain": "strain=DSM 2908",
                "accession": "GCA_000621145.1",
                "taxid": 53332,
                "species_taxid": 53332,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.1709,
                "matched_fragments": 77,
                "total_fragments": 625,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Desulfobulbus propionicus",
                "strain": "strain=DSM 2032",
                "accession": "GCA_000186885.1",
                "taxid": 894,
                "species_taxid": 894,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.0615,
                "matched_fragments": 67,
                "total_fragments": 625,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Desulfoprunum benzoelyticum",
                "strain": "strain=DSM 28570",
                "accession": "GCA_014201505.1",
                "taxid": 1506996,
                "species_taxid": 1506996,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.6917,
                "matched_fragments": 50,
                "total_fragments": 625,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Desulfogranum mediterraneum",
                "strain": "strain=DSM 13871",
                "accession": "GCA_000429965.1",
                "taxid": 160661,
                "species_taxid": 160661,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.5092,
                "matched_fragments": 61,
                "total_fragments": 625,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 82.29,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_002841785.1",
                "gtdb_species": "s__UBA2262 sp002841785",
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                "matched_fragments": 444,
                "total_fragments": 625,
                "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Desulfobulbia;o__Desulfobulbales;f__Desulfurivibrionaceae;g__UBA2262",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.87",
                "min_intra_species_ani": "98.69",
                "mean_intra_species_af": "0.72",
                "min_intra_species_af": "0.70",
                "num_clustered_genomes": 5,
                "status": "conclusive"
            },
            {
                "accession": "GCA_002347095.1",
                "gtdb_species": "s__UBA2262 sp002347095",
                "ani": 92.5224,
                "matched_fragments": 532,
                "total_fragments": 625,
                "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Desulfobulbia;o__Desulfobulbales;f__Desulfurivibrionaceae;g__UBA2262",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.22",
                "min_intra_species_ani": "98.22",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.94",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_018830485.1",
                "gtdb_species": "s__UBA2262 sp018830485",
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                "matched_fragments": 471,
                "total_fragments": 625,
                "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Desulfobulbia;o__Desulfobulbales;f__Desulfurivibrionaceae;g__UBA2262",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.86",
                "min_intra_species_ani": "99.86",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.94",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_903869265.1",
                "gtdb_species": "s__UBA2262 sp903869265",
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                "matched_fragments": 445,
                "total_fragments": 625,
                "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Desulfobulbia;o__Desulfobulbales;f__Desulfurivibrionaceae;g__UBA2262",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "99.97",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 39,
                "status": "-"
            },
            {
                "accession": "GCA_001799285.1",
                "gtdb_species": "s__UBA2262 sp001799285",
                "ani": 84.0431,
                "matched_fragments": 405,
                "total_fragments": 625,
                "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Desulfobulbia;o__Desulfobulbales;f__Desulfurivibrionaceae;g__UBA2262",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_013349295.1",
                "gtdb_species": "s__UBA2262 sp013349295",
                "ani": 83.9762,
                "matched_fragments": 394,
                "total_fragments": 625,
                "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Desulfobulbia;o__Desulfobulbales;f__Desulfurivibrionaceae;g__UBA2262",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_013791995.1",
                "gtdb_species": "s__UBA2262 sp013791995",
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                "matched_fragments": 400,
                "total_fragments": 625,
                "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Desulfobulbia;o__Desulfobulbales;f__Desulfurivibrionaceae;g__UBA2262",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.67",
                "min_intra_species_ani": "99.67",
                "mean_intra_species_af": "0.88",
                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_001799255.1",
                "gtdb_species": "s__UBA2262 sp001799255",
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                "matched_fragments": 311,
                "total_fragments": 625,
                "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Desulfobulbia;o__Desulfobulbales;f__Desulfurivibrionaceae;g__UBA2262",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_003517965.1",
                "gtdb_species": "s__UBA2262 sp003517965",
                "ani": 81.421,
                "matched_fragments": 301,
                "total_fragments": 625,
                "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Desulfobulbia;o__Desulfobulbales;f__Desulfurivibrionaceae;g__UBA2262",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.47",
                "min_intra_species_ani": "99.47",
                "mean_intra_species_af": "0.87",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 2,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Desulfobacterota",
        "c__Desulfobulbia",
        "o__Desulfobulbales",
        "f__Desulfurivibrionaceae",
        "g__Thiovibrio",
        "s__Thiovibrio sp002841785"
    ],
    "_genome_taxon": [
        "Pseudomonadota",
        "bacterium",
        "d__Bacteria",
        "p__Desulfobacterota",
        "c__Desulfobulbia",
        "o__Desulfobulbales",
        "f__Desulfurivibrionaceae",
        "g__Thiovibrio",
        "s__Thiovibrio sp002841785",
        "Bacteria",
        "Desulfobacterota",
        "Desulfobulbia",
        "Desulfobulbales",
        "Desulfurivibrionaceae",
        "Thiovibrio",
        "Thiovibrio",
        "sp002841785"
    ],
    "_meo": [
        {
            "id": "MEO_0000366",
            "label": "ground water"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}