{
    "type": "genome",
    "identifier": "GCA_018969225.1",
    "organism": "Gemmatimonadota bacterium",
    "title": "Gemmatimonadota bacterium",
    "description": "derived from metagenome; genus undefined",
    "data type": "Genome sequencing and assembly",
    "organization": "Sun Yat-sen University",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_018969225.1",
        "bioproject": "PRJNA675967",
        "biosample": "SAMN16745427",
        "wgs_master": "JAGWYS000000000.1",
        "refseq_category": "na",
        "taxid": "2026742",
        "species_taxid": "2026742",
        "organism_name": "Gemmatimonadota bacterium",
        "infraspecific_name": "",
        "isolate": "REEB496",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2021/06/21",
        "asm_name": "ASM1896922v1",
        "submitter": "Sun Yat-sen University",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/969/225/GCA_018969225.1_ASM1896922v1",
        "excluded_from_refseq": "derived from metagenome; genus undefined",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2021-06-21",
    "dateModified": "2021-06-21",
    "datePublished": "2021-06-21",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Gemmatimonadota bacterium"
        ],
        "sample_taxid": [
            "2026742"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "China:Jiangxi"
        ],
        "sample_host_location_id": [],
        "data_size": "1.018 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 8.33,
        "strain_heterogeneity": 50.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "3818683",
        "Number of Sequences": "375",
        "Longest Sequences (bp)": "71821",
        "N50 (bp)": "15324",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "73.4",
        "Number of CDSs": "2996",
        "Average Protein Length": "347.7",
        "Coding Ratio (%)": "81.8",
        "Number of rRNAs": "0",
        "Number of tRNAs": "33",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Gemmatimonas phototrophica",
                "strain": "strain=AP64",
                "accession": "GCA_000695095.2",
                "taxid": 1379270,
                "species_taxid": 1379270,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.5399,
                "matched_fragments": 293,
                "total_fragments": 1074,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Gemmatimonas aurantiaca",
                "strain": "strain=T-27",
                "accession": "GCA_000010305.1",
                "taxid": 173480,
                "species_taxid": 173480,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.4539,
                "matched_fragments": 266,
                "total_fragments": 1074,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Gemmatimonas groenlandica",
                "strain": "strain=TET16",
                "accession": "GCA_013004105.1",
                "taxid": 2732249,
                "species_taxid": 2732249,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.166,
                "matched_fragments": 305,
                "total_fragments": 1074,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Gemmatirosa kalamazoonensis",
                "strain": "strain=KBS708",
                "accession": "GCA_000522985.1",
                "taxid": 861299,
                "species_taxid": 861299,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.4958,
                "matched_fragments": 402,
                "total_fragments": 1074,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Longimicrobium terrae",
                "strain": "strain=DSM 29007",
                "accession": "GCA_014202995.1",
                "taxid": 1639882,
                "species_taxid": 1639882,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.3654,
                "matched_fragments": 218,
                "total_fragments": 1074,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Longimicrobium terrae",
                "strain": "strain=CB-286315",
                "accession": "GCA_013000925.1",
                "taxid": 1639882,
                "species_taxid": 1639882,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.3492,
                "matched_fragments": 219,
                "total_fragments": 1074,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Thermomonas haemolytica",
                "strain": "strain=LMG 19653",
                "accession": "GCA_006352395.1",
                "taxid": 141949,
                "species_taxid": 141949,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.9457,
                "matched_fragments": 122,
                "total_fragments": 1074,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Inmirania thermothiophila",
                "strain": "strain=DSM 100275",
                "accession": "GCA_003751635.1",
                "taxid": 1750597,
                "species_taxid": 1750597,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.9392,
                "matched_fragments": 167,
                "total_fragments": 1074,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Ramlibacter alkalitolerans",
                "strain": "strain=KACC 19305",
                "accession": "GCA_016722765.1",
                "taxid": 2039631,
                "species_taxid": 2039631,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.9305,
                "matched_fragments": 156,
                "total_fragments": 1074,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Azospirillum thermophilum",
                "strain": "strain=CFH 70021",
                "accession": "GCA_003130795.1",
                "taxid": 2202148,
                "species_taxid": 2202148,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.8604,
                "matched_fragments": 167,
                "total_fragments": 1074,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Actinacidiphila acididurans",
                "strain": "strain=KK5PA1",
                "accession": "GCA_016918855.1",
                "taxid": 2784346,
                "species_taxid": 2784346,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.8596,
                "matched_fragments": 208,
                "total_fragments": 1074,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Thermaerobacter marianensis",
                "strain": "strain=DSM 12885",
                "accession": "GCA_000184705.1",
                "taxid": 73919,
                "species_taxid": 73919,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.7893,
                "matched_fragments": 101,
                "total_fragments": 1074,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Metallibacterium scheffleri",
                "strain": "strain=DSM 24874",
                "accession": "GCA_004798955.1",
                "taxid": 993689,
                "species_taxid": 993689,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.7882,
                "matched_fragments": 100,
                "total_fragments": 1074,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Metallibacterium scheffleri",
                "strain": "strain=DKE6",
                "accession": "GCA_002077135.1",
                "taxid": 993689,
                "species_taxid": 993689,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.7806,
                "matched_fragments": 103,
                "total_fragments": 1074,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 8.33,
            "strain_heterogeneity": 50.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_018969225.1",
                "gtdb_species": "s__Gemmatimonas sp018969225",
                "ani": 100.0,
                "matched_fragments": 1057,
                "total_fragments": 1074,
                "gtdb_taxonomy": "d__Bacteria;p__Gemmatimonadota;c__Gemmatimonadetes;o__Gemmatimonadales;f__Gemmatimonadaceae;g__Gemmatimonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCA_016741895.1",
                "gtdb_species": "s__Gemmatimonas sp016741895",
                "ani": 78.4131,
                "matched_fragments": 323,
                "total_fragments": 1074,
                "gtdb_taxonomy": "d__Bacteria;p__Gemmatimonadota;c__Gemmatimonadetes;o__Gemmatimonadales;f__Gemmatimonadaceae;g__Gemmatimonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_002483225.1",
                "gtdb_species": "s__Gemmatimonas sp002483225",
                "ani": 77.9646,
                "matched_fragments": 311,
                "total_fragments": 1074,
                "gtdb_taxonomy": "d__Bacteria;p__Gemmatimonadota;c__Gemmatimonadetes;o__Gemmatimonadales;f__Gemmatimonadaceae;g__Gemmatimonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.70",
                "min_intra_species_ani": "97.70",
                "mean_intra_species_af": "0.96",
                "min_intra_species_af": "0.96",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_011390885.1",
                "gtdb_species": "s__JAABRT01 sp011390885",
                "ani": 77.9408,
                "matched_fragments": 403,
                "total_fragments": 1074,
                "gtdb_taxonomy": "d__Bacteria;p__Gemmatimonadota;c__Gemmatimonadetes;o__Gemmatimonadales;f__Gemmatimonadaceae;g__JAABRT01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000695095.2",
                "gtdb_species": "s__Gemmatimonas phototrophica",
                "ani": 77.5428,
                "matched_fragments": 292,
                "total_fragments": 1074,
                "gtdb_taxonomy": "d__Bacteria;p__Gemmatimonadota;c__Gemmatimonadetes;o__Gemmatimonadales;f__Gemmatimonadaceae;g__Gemmatimonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000010305.1",
                "gtdb_species": "s__Gemmatimonas aurantiaca",
                "ani": 77.4554,
                "matched_fragments": 265,
                "total_fragments": 1074,
                "gtdb_taxonomy": "d__Bacteria;p__Gemmatimonadota;c__Gemmatimonadetes;o__Gemmatimonadales;f__Gemmatimonadaceae;g__Gemmatimonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_903894655.1",
                "gtdb_species": "s__Gemmatimonas sp903894655",
                "ani": 77.2342,
                "matched_fragments": 208,
                "total_fragments": 1074,
                "gtdb_taxonomy": "d__Bacteria;p__Gemmatimonadota;c__Gemmatimonadetes;o__Gemmatimonadales;f__Gemmatimonadaceae;g__Gemmatimonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_016742275.1",
                "gtdb_species": "s__Gemmatimonas sp016742275",
                "ani": 77.224,
                "matched_fragments": 195,
                "total_fragments": 1074,
                "gtdb_taxonomy": "d__Bacteria;p__Gemmatimonadota;c__Gemmatimonadetes;o__Gemmatimonadales;f__Gemmatimonadaceae;g__Gemmatimonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_903900795.1",
                "gtdb_species": "s__Gemmatimonas sp903900795",
                "ani": 77.2139,
                "matched_fragments": 260,
                "total_fragments": 1074,
                "gtdb_taxonomy": "d__Bacteria;p__Gemmatimonadota;c__Gemmatimonadetes;o__Gemmatimonadales;f__Gemmatimonadaceae;g__Gemmatimonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_016182795.1",
                "gtdb_species": "s__PNKL01 sp016182795",
                "ani": 76.9339,
                "matched_fragments": 159,
                "total_fragments": 1074,
                "gtdb_taxonomy": "d__Bacteria;p__Gemmatimonadota;c__Gemmatimonadetes;o__Gemmatimonadales;f__Gemmatimonadaceae;g__PNKL01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_016720905.1",
                "gtdb_species": "s__Gemmatimonas sp016720905",
                "ani": 76.9285,
                "matched_fragments": 261,
                "total_fragments": 1074,
                "gtdb_taxonomy": "d__Bacteria;p__Gemmatimonadota;c__Gemmatimonadetes;o__Gemmatimonadales;f__Gemmatimonadaceae;g__Gemmatimonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_011390935.1",
                "gtdb_species": "s__JAABRT01 sp011390935",
                "ani": 76.8291,
                "matched_fragments": 252,
                "total_fragments": 1074,
                "gtdb_taxonomy": "d__Bacteria;p__Gemmatimonadota;c__Gemmatimonadetes;o__Gemmatimonadales;f__Gemmatimonadaceae;g__JAABRT01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_016200495.1",
                "gtdb_species": "s__JACPPC01 sp016200495",
                "ani": 76.8262,
                "matched_fragments": 251,
                "total_fragments": 1074,
                "gtdb_taxonomy": "d__Bacteria;p__Gemmatimonadota;c__Gemmatimonadetes;o__Gemmatimonadales;f__Gemmatimonadaceae;g__JACPPC01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_903906325.1",
                "gtdb_species": "s__PNKF01 sp903906325",
                "ani": 76.7654,
                "matched_fragments": 111,
                "total_fragments": 1074,
                "gtdb_taxonomy": "d__Bacteria;p__Gemmatimonadota;c__Gemmatimonadetes;o__Gemmatimonadales;f__Gemmatimonadaceae;g__PNKF01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Gemmatimonadota",
        "c__Gemmatimonadetes",
        "o__Gemmatimonadales",
        "f__Gemmatimonadaceae",
        "g__Gemmatimonas",
        "s__Gemmatimonas sp018969225"
    ],
    "_genome_taxon": [
        "Gemmatimonadota",
        "bacterium",
        "d__Bacteria",
        "p__Gemmatimonadota",
        "c__Gemmatimonadetes",
        "o__Gemmatimonadales",
        "f__Gemmatimonadaceae",
        "g__Gemmatimonas",
        "s__Gemmatimonas sp018969225",
        "Bacteria",
        "Gemmatimonadota",
        "Gemmatimonadetes",
        "Gemmatimonadales",
        "Gemmatimonadaceae",
        "Gemmatimonas",
        "Gemmatimonas",
        "sp018969225"
    ],
    "_meo": [
        {
            "id": "MEO_0000034",
            "label": "acid mine drainage"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}