{ "type": "genome", "identifier": "GCA_018969355.1", "organism": "Actinomycetales bacterium", "title": "Actinomycetales bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "Sun Yat-sen University", "publication": [ {} ], "properties": { "assembly_accession": "GCA_018969355.1", "bioproject": "PRJNA675967", "biosample": "SAMN16745423", "wgs_master": "JAGWYO000000000.1", "refseq_category": "na", "taxid": "1911520", "species_taxid": "1911520", "organism_name": "Actinomycetales bacterium", "infraspecific_name": "", "isolate": "REEB492", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/06/21", "asm_name": "ASM1896935v1", "submitter": "Sun Yat-sen University", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/969/355/GCA_018969355.1_ASM1896935v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-06-21", "dateModified": "2021-06-21", "datePublished": "2021-06-21", "_annotation": { "sample_count": 1, "sample_organism": [ "Actinomycetales bacterium" ], "sample_taxid": [ "1911520" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China:Jiangxi" ], "sample_host_location_id": [], "data_size": "0.403 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 100.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "1401825", "Number of Sequences": "83", "Longest Sequences (bp)": "124651", "N50 (bp)": "44222", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "45.9", "Number of CDSs": "1341", "Average Protein Length": "311.6", "Coding Ratio (%)": "89.4", "Number of rRNAs": "0", "Number of tRNAs": "34", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [], "cc_result": { "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 100.0 }, "gtdb_result": [ { "accession": "GCA_018969355.1", "gtdb_species": "s__Planktophila sp018969355", "ani": 100.0, "matched_fragments": 421, "total_fragments": 423, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Nanopelagicales;f__Nanopelagicaceae;g__Planktophila", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCA_002284895.1", "gtdb_species": "s__Planktophila sp002284895", "ani": 87.145, 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"gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Nanopelagicales;f__Nanopelagicaceae;g__Planktophila", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_003569265.1", "gtdb_species": "s__Planktophila sp003569265", "ani": 84.6481, "matched_fragments": 177, "total_fragments": 423, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Nanopelagicales;f__Nanopelagicaceae;g__Planktophila", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.55", "min_intra_species_ani": "99.55", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.94", "num_clustered_genomes": 2, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.27, "cell_length": 0.183, "doubling_h": null, "growth_tmp": 36.625, "optimum_tmp": 36.523, "optimum_ph": 7.187, 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"Nanopelagicales", "Nanopelagicaceae", "Planktophila", "Planktophila", "sp018969355" ], "_meo": [ { "id": "MEO_0000034", "label": "acid mine drainage" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }