{ "type": "genome", "identifier": "GCA_018970745.1", "organism": "Actinomycetales bacterium", "title": "Actinomycetales bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "Sun Yat-sen University", "publication": [ {} ], "properties": { "assembly_accession": "GCA_018970745.1", "bioproject": "PRJNA675967", "biosample": "SAMN16745349", "wgs_master": "JAGWVS000000000.1", "refseq_category": "na", "taxid": "1911520", "species_taxid": "1911520", "organism_name": "Actinomycetales bacterium", "infraspecific_name": "", "isolate": "REEB425", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/06/21", "asm_name": "ASM1897074v1", "submitter": "Sun Yat-sen University", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/970/745/GCA_018970745.1_ASM1897074v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-06-21", "dateModified": "2021-06-21", "datePublished": "2021-06-21", "_annotation": { "sample_count": 1, "sample_organism": [ "Actinomycetales bacterium" ], "sample_taxid": [ "1911520" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China:Jiangxi" ], "sample_host_location_id": [], "data_size": "0.688 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 95.83, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2505206", "Number of Sequences": "134", "Longest Sequences (bp)": "123358", "N50 (bp)": "31840", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "68.2", "Number of CDSs": "2342", "Average Protein Length": "316.0", "Coding Ratio (%)": "88.6", "Number of rRNAs": "0", "Number of tRNAs": "44", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Motilibacter peucedani", "strain": "strain=RP-AC37", "accession": "GCA_003634695.1", "taxid": 598650, "species_taxid": 598650, "relation_to_type": "type", "validated": true, "ani": 77.3296, "matched_fragments": 175, "total_fragments": 765, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides gansuensis", "strain": "strain=WSJ-1", "accession": "GCA_003076135.1", "taxid": 2138300, "species_taxid": 2138300, "relation_to_type": "type", "validated": true, "ani": 77.1652, "matched_fragments": 153, "total_fragments": 765, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Motilibacter aurantiacus", "strain": "strain=K478", "accession": "GCA_011250645.1", "taxid": 2714955, "species_taxid": 2714955, "relation_to_type": "type", "validated": true, "ani": 77.1362, "matched_fragments": 149, "total_fragments": 765, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides jishulii", "strain": "strain=dk3136", "accession": "GCA_006007965.1", "taxid": 2575440, "species_taxid": 2575440, "relation_to_type": "type", "validated": true, "ani": 77.0805, "matched_fragments": 113, "total_fragments": 765, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides furvisabuli", "strain": "strain=JCM 13813", "accession": "GCA_021083185.1", "taxid": 375542, "species_taxid": 375542, "relation_to_type": "type", "validated": true, "ani": 77.0593, "matched_fragments": 147, "total_fragments": 765, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Motilibacter rhizosphaerae", "strain": "strain=DSM 45622", "accession": "GCA_004216915.1", "taxid": 598652, "species_taxid": 598652, "relation_to_type": "type", "validated": true, "ani": 77.0363, "matched_fragments": 172, "total_fragments": 765, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces barkulensis", "strain": "strain=RC 1831", "accession": "GCA_002811705.2", "taxid": 1257026, "species_taxid": 1257026, "relation_to_type": "type", "validated": true, "ani": 77.0337, "matched_fragments": 141, "total_fragments": 765, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides anomalus", "strain": "strain=HKS04", "accession": "GCA_011046535.1", "taxid": 2712223, "species_taxid": 2712223, "relation_to_type": "type", "validated": true, "ani": 77.0188, "matched_fragments": 159, "total_fragments": 765, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides flavescens", "strain": "strain=YIM 123512", "accession": "GCA_009823805.1", "taxid": 2691959, "species_taxid": 2691959, "relation_to_type": "type", "validated": true, "ani": 76.9608, "matched_fragments": 178, "total_fragments": 765, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides astragali", "strain": "strain=CGMCC 4.7327", "accession": "GCA_024436375.1", "taxid": 1776736, "species_taxid": 1776736, "relation_to_type": "type", "validated": true, "ani": 76.9548, "matched_fragments": 147, "total_fragments": 765, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides lacusdianchii", "strain": "strain=JXJ CY 38", "accession": "GCA_020102855.1", "taxid": 2783664, "species_taxid": 2783664, "relation_to_type": "type", "validated": true, "ani": 76.9087, "matched_fragments": 161, "total_fragments": 765, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides rubriscoriae", "strain": "strain=DSM 23986", "accession": "GCA_008087085.1", "taxid": 642762, "species_taxid": 642762, "relation_to_type": "type", "validated": true, "ani": 76.9038, "matched_fragments": 175, "total_fragments": 765, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudokineococcus lusitanus", "strain": "strain=CECT 7306", "accession": "GCA_003751265.1", "taxid": 763993, "species_taxid": 763993, "relation_to_type": "type", "validated": true, "ani": 76.8831, "matched_fragments": 135, "total_fragments": 765, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides litoris", "strain": "strain=DSM 103718", "accession": "GCA_006346315.1", "taxid": 1926648, "species_taxid": 1926648, "relation_to_type": "type", "validated": true, "ani": 76.8446, "matched_fragments": 179, "total_fragments": 765, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Jiangella anatolica", "strain": "strain=GTF31", "accession": "GCA_003236295.1", "taxid": 2670374, "species_taxid": 2670374, "relation_to_type": "type", "validated": true, "ani": 76.812, "matched_fragments": 155, "total_fragments": 765, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nonomuraea indica", "strain": "strain=DRQ-2", "accession": "GCA_002850745.1", "taxid": 1581193, "species_taxid": 1581193, "relation_to_type": "type", "validated": true, "ani": 76.7753, "matched_fragments": 163, "total_fragments": 765, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomadura rubrobrunea", "strain": "strain=NBRC 15275", "accession": "GCA_001552235.1", "taxid": 115335, "species_taxid": 115335, "relation_to_type": "type", "validated": true, "ani": 76.7584, "matched_fragments": 147, "total_fragments": 765, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces griseocarneus", "strain": "strain=CGMCC4.1088", "accession": "GCA_020093395.1", "taxid": 51201, "species_taxid": 51201, "relation_to_type": "type", "validated": true, "ani": 76.7264, "matched_fragments": 163, "total_fragments": 765, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomonospora litoralis", "strain": "strain=M2", "accession": "GCA_004323735.1", "taxid": 2498135, "species_taxid": 2498135, "relation_to_type": "type", "validated": true, "ani": 76.695, "matched_fragments": 122, "total_fragments": 765, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces griseocarneus", "strain": "strain=JCM 4580", "accession": "GCA_014655595.1", "taxid": 51201, "species_taxid": 51201, "relation_to_type": "type", "validated": true, "ani": 76.6908, "matched_fragments": 167, "total_fragments": 765, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces monomycini", "strain": "strain=NRRL B-24309", "accession": "GCA_000715845.1", "taxid": 371720, "species_taxid": 371720, "relation_to_type": "type", "validated": true, "ani": 76.6703, "matched_fragments": 150, "total_fragments": 765, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces monomycini", "strain": "strain=NRRL B-24309", "accession": "GCA_022271435.1", "taxid": 371720, "species_taxid": 371720, "relation_to_type": "type", "validated": true, "ani": 76.6474, "matched_fragments": 150, "total_fragments": 765, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces rimosus subsp. rimosus", "strain": "strain=NRRL ISP-5260", "accession": "GCA_000717285.1", "taxid": 132474, "species_taxid": 1927, "relation_to_type": "type", "validated": true, "ani": 76.6361, "matched_fragments": 147, "total_fragments": 765, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Planobispora longispora", "strain": "strain=NBRC 13918", "accession": "GCA_016863135.1", "taxid": 28887, "species_taxid": 28887, "relation_to_type": "type", "validated": true, "ani": 76.6004, "matched_fragments": 170, "total_fragments": 765, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptacidiphilus jiangxiensis", "strain": "strain=CGMCC 4.1857", "accession": "GCA_900109465.1", "taxid": 235985, "species_taxid": 235985, "relation_to_type": "type", "validated": true, "ani": 76.5861, "matched_fragments": 171, "total_fragments": 765, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces rimosus subsp. rimosus", "strain": "strain=ATCC 10970", "accession": "GCA_000331185.2", "taxid": 132474, "species_taxid": 1927, "relation_to_type": "type", "validated": true, "ani": 76.5791, "matched_fragments": 154, "total_fragments": 765, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces rimosus subsp. rimosus", "strain": "strain=R7", "accession": "GCA_022760195.1", "taxid": 132474, "species_taxid": 1927, "relation_to_type": "type", "validated": true, "ani": 76.5787, "matched_fragments": 153, "total_fragments": 765, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Jiangella alkaliphila", "strain": "strain=KCTC 19222", "accession": "GCA_001005145.1", "taxid": 419479, "species_taxid": 419479, "relation_to_type": "type", "validated": true, "ani": 76.5704, "matched_fragments": 172, "total_fragments": 765, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Jiangella alkaliphila", "strain": "strain=DSM 45079", "accession": "GCA_900105925.1", "taxid": 419479, "species_taxid": 419479, "relation_to_type": "type", "validated": true, "ani": 76.5591, "matched_fragments": 174, "total_fragments": 765, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microbispora corallina", "strain": "strain=NBRC 16416", "accession": "GCA_016863035.1", "taxid": 83302, "species_taxid": 83302, "relation_to_type": "type", "validated": true, "ani": 76.5362, "matched_fragments": 157, "total_fragments": 765, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomadura litoris", "strain": "strain=NEAU-AAG5", "accession": "GCA_009733595.1", "taxid": 2678616, "species_taxid": 2678616, "relation_to_type": "type", "validated": true, "ani": 76.4852, "matched_fragments": 148, "total_fragments": 765, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces musisoli", "strain": "strain=CH5-8", "accession": "GCA_016741855.1", "taxid": 2802280, "species_taxid": 2802280, "relation_to_type": "type", "validated": true, "ani": 76.3343, "matched_fragments": 166, "total_fragments": 765, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ornithinimicrobium murale", "strain": "strain=DSM 22056", "accession": "GCA_003352835.1", "taxid": 1050153, "species_taxid": 1050153, "relation_to_type": "type", "validated": true, "ani": 76.3244, "matched_fragments": 59, "total_fragments": 765, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomadura macra", "strain": "strain=NBRC 14102", "accession": "GCA_001552215.1", "taxid": 46164, "species_taxid": 46164, "relation_to_type": "type", "validated": true, "ani": 76.3004, "matched_fragments": 135, "total_fragments": 765, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 95.83, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_903848435.1", "gtdb_species": "s__Mxb001 sp903848435", "ani": 95.5521, "matched_fragments": 401, "total_fragments": 765, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Nanopelagicales;f__S36-B12;g__Mxb001", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.93", "min_intra_species_ani": "95.89", "mean_intra_species_af": "0.80", "min_intra_species_af": "0.74", "num_clustered_genomes": 3, "status": "conclusive" }, { "accession": "GCA_004379115.1", "gtdb_species": "s__Mxb001 sp004379115", "ani": 84.4404, "matched_fragments": 513, "total_fragments": 765, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Nanopelagicales;f__S36-B12;g__Mxb001", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_016870515.1", "gtdb_species": "s__Mxb001 sp016870515", "ani": 81.6121, "matched_fragments": 505, "total_fragments": 765, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Nanopelagicales;f__S36-B12;g__Mxb001", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_016870425.1", "gtdb_species": "s__Mxb001 sp016870425", "ani": 80.1443, "matched_fragments": 359, "total_fragments": 765, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Nanopelagicales;f__S36-B12;g__Mxb001", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_903909555.1", "gtdb_species": "s__Mxb001 sp903909555", "ani": 79.5451, "matched_fragments": 360, "total_fragments": 765, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Nanopelagicales;f__S36-B12;g__Mxb001", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.15", "min_intra_species_ani": "99.05", "mean_intra_species_af": "0.83", "min_intra_species_af": "0.81", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCA_903954205.1", "gtdb_species": "s__Mxb001 sp903954205", "ani": 79.3066, "matched_fragments": 283, "total_fragments": 765, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Nanopelagicales;f__S36-B12;g__Mxb001", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.46", "min_intra_species_ani": "98.20", "mean_intra_species_af": "0.79", "min_intra_species_af": "0.70", "num_clustered_genomes": 14, "status": "-" }, { "accession": "GCA_018970025.1", "gtdb_species": "s__REEB460 sp018970025", "ani": 77.6453, "matched_fragments": 192, "total_fragments": 765, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Nanopelagicales;f__S36-B12;g__REEB460", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_016125355.1", "gtdb_species": "s__UBA10649 sp016125355", "ani": 77.5974, "matched_fragments": 231, "total_fragments": 765, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Nanopelagicales;f__S36-B12;g__UBA10649", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004025965.2", "gtdb_species": "s__Phycicoccus flavus", "ani": 76.9441, "matched_fragments": 150, "total_fragments": 765, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Dermatophilaceae;g__Phycicoccus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014650495.1", "gtdb_species": "s__Streptomyces cinnamoneus", "ani": 76.7551, "matched_fragments": 174, "total_fragments": 765, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014655595.1", "gtdb_species": "s__Streptomyces griseocarneus", "ani": 76.728, "matched_fragments": 164, "total_fragments": 765, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_008634025.1", "gtdb_species": "s__Streptomyces albofaciens", "ani": 76.7195, "matched_fragments": 145, "total_fragments": 765, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_008704655.1", "gtdb_species": "s__Streptomyces rimosus", "ani": 76.5924, "matched_fragments": 150, "total_fragments": 765, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.17", "min_intra_species_ani": "96.53", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.89", "num_clustered_genomes": 49, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.27, "cell_length": 0.183, "doubling_h": null, "growth_tmp": 36.625, "optimum_tmp": 36.523, "optimum_ph": 7.187, "genome_size": 2544543.814, "gc_content": 63.099, "coding_genes": 2082.586, "rRNA16S_genes": 2.851, "tRNA_genes": 48.571, "gram_stain": 1.0, "sporulation": 0.0, "motility": 0.035, "range_salinity": null, "facultative_respiration": 0.222, "anaerobic_respiration": 0.351, "aerobic_respiration": 0.425, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 0.968, "coccus_cell_shape": 0.031, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_gtdb_taxon": [ "d__Bacteria", "p__Actinomycetota", "c__Actinomycetes", "o__S36-B12", "f__S36-B12", "g__Mxb001", "s__Mxb001 sp903848435" ], "_genome_taxon": [ "Actinomycetales", "bacterium", "d__Bacteria", "p__Actinomycetota", "c__Actinomycetes", "o__S36-B12", "f__S36-B12", "g__Mxb001", "s__Mxb001 sp903848435", "Bacteria", "Actinomycetota", "Actinomycetes", "S36-B12", "S36-B12", "Mxb001", "Mxb001", "sp903848435" ], "_meo": [ { "id": "MEO_0000034", "label": "acid mine drainage" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }