{ "type": "genome", "identifier": "GCA_018970795.1", "organism": "Burkholderiales bacterium", "title": "Burkholderiales bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "Sun Yat-sen University", "publication": [ {} ], "properties": { "assembly_accession": "GCA_018970795.1", "bioproject": "PRJNA675967", "biosample": "SAMN16745347", "wgs_master": "JAGWVQ000000000.1", "refseq_category": "na", "taxid": "1891238", "species_taxid": "1891238", "organism_name": "Burkholderiales bacterium", "infraspecific_name": "", "isolate": "REEB423", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/06/21", "asm_name": "ASM1897079v1", "submitter": "Sun Yat-sen University", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/970/795/GCA_018970795.1_ASM1897079v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-06-21", "dateModified": "2021-06-21", "datePublished": "2021-06-21", "_annotation": { "sample_count": 1, "sample_organism": [ "Burkholderiales bacterium" ], "sample_taxid": [ "1891238" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China:Jiangxi" ], "sample_host_location_id": [], "data_size": "0.756 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 91.67, "contamination": 8.33, "strain_heterogeneity": 100.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2639411", "Number of Sequences": "335", "Longest Sequences (bp)": "48761", "N50 (bp)": "11669", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "55.1", "Number of CDSs": "2219", "Average Protein Length": "294.8", "Coding Ratio (%)": "74.4", "Number of rRNAs": "0", "Number of tRNAs": "33", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Noviherbaspirillum aridicola", "strain": "strain=NCCP-691", "accession": "GCA_019656455.1", "taxid": 2849687, "species_taxid": 2849687, "relation_to_type": "type", "validated": true, "ani": 77.1877, "matched_fragments": 98, "total_fragments": 693, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Noviherbaspirillum humi", "strain": "strain=U15", "accession": "GCA_900188095.1", "taxid": 1688639, "species_taxid": 1688639, "relation_to_type": "type", "validated": true, "ani": 77.1777, "matched_fragments": 92, "total_fragments": 693, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Noviherbaspirillum galbum", "strain": "strain=17J57-3", "accession": "GCA_010974945.1", "taxid": 2709383, "species_taxid": 2709383, "relation_to_type": "type", "validated": true, "ani": 77.0217, "matched_fragments": 91, "total_fragments": 693, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oxalicibacterium solurbis", "strain": "strain=CCM 7664", "accession": "GCA_014635845.1", "taxid": 69280, "species_taxid": 69280, "relation_to_type": "type", "validated": true, "ani": 76.9992, "matched_fragments": 76, "total_fragments": 693, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Noviherbaspirillum pedocola", "strain": "strain=DKR-6", "accession": "GCA_016632335.1", "taxid": 2801341, "species_taxid": 2801341, "relation_to_type": "type", "validated": true, "ani": 76.9336, "matched_fragments": 104, "total_fragments": 693, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Herbaspirillum frisingense", "strain": "strain=GSF30", "accession": "GCA_000300975.2", "taxid": 92645, "species_taxid": 92645, "relation_to_type": "type", "validated": true, "ani": 76.8361, "matched_fragments": 81, "total_fragments": 693, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Collimonas pratensis", "strain": "strain=Ter91", "accession": "GCA_001584185.1", "taxid": 279113, "species_taxid": 279113, "relation_to_type": "type", "validated": true, "ani": 76.8126, "matched_fragments": 83, "total_fragments": 693, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Noviherbaspirillum malthae", "strain": "strain=CC-AFH3", "accession": "GCA_015352985.1", "taxid": 1260987, "species_taxid": 1260987, "relation_to_type": "type", "validated": true, "ani": 76.8076, "matched_fragments": 98, "total_fragments": 693, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Massilia arenosa", "strain": "strain=MC02", "accession": "GCA_004614185.1", "taxid": 2561931, "species_taxid": 2561931, "relation_to_type": "type", "validated": true, "ani": 76.8051, "matched_fragments": 69, "total_fragments": 693, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ralstonia pickettii", "strain": "strain=ATCC 27511", "accession": "GCA_000743455.1", "taxid": 329, "species_taxid": 329, "relation_to_type": "type", "validated": true, "ani": 76.7269, "matched_fragments": 50, "total_fragments": 693, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Collimonas humicola", "strain": "strain=RLT1W51", "accession": "GCA_018304945.1", "taxid": 2825886, "species_taxid": 2825886, "relation_to_type": "type", "validated": true, "ani": 76.6859, "matched_fragments": 81, "total_fragments": 693, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oxalicibacterium flavum", "strain": "strain=CCM 7086", "accession": "GCA_014635065.1", "taxid": 179467, "species_taxid": 179467, "relation_to_type": "type", "validated": true, "ani": 76.6423, "matched_fragments": 81, "total_fragments": 693, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Herbaspirillum rhizosphaerae", "strain": "strain=UMS-37", "accession": "GCA_001189965.1", "taxid": 346179, "species_taxid": 346179, "relation_to_type": "type", "validated": true, "ani": 76.591, "matched_fragments": 79, "total_fragments": 693, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Massilia timonae", "strain": "strain=CCUG 45783", "accession": "GCA_000315425.1", "taxid": 47229, "species_taxid": 47229, "relation_to_type": "type", "validated": true, "ani": 76.5508, "matched_fragments": 81, "total_fragments": 693, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Massilia atriviolacea", "strain": "strain=SOD", "accession": "GCA_003953935.1", "taxid": 2495579, "species_taxid": 2495579, "relation_to_type": "type", "validated": true, "ani": 76.5479, "matched_fragments": 73, "total_fragments": 693, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Collimonas arenae", "strain": "strain=Ter10", "accession": "GCA_001584165.1", "taxid": 279058, "species_taxid": 279058, "relation_to_type": "type", "validated": true, "ani": 76.5409, "matched_fragments": 82, "total_fragments": 693, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoduganella dura", "strain": "strain=KCTC 12342", "accession": "GCA_014651395.1", "taxid": 321982, "species_taxid": 321982, "relation_to_type": "type", "validated": true, "ani": 76.4524, "matched_fragments": 69, "total_fragments": 693, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoduganella dura", "strain": "strain=DSM 17513", "accession": "GCA_009727155.1", "taxid": 321982, "species_taxid": 321982, "relation_to_type": "type", "validated": true, "ani": 76.4248, "matched_fragments": 73, "total_fragments": 693, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Duganella flavida", "strain": "strain=FT135W", "accession": "GCA_009857445.1", "taxid": 2692175, "species_taxid": 2692175, "relation_to_type": "type", "validated": true, "ani": 76.4108, "matched_fragments": 68, "total_fragments": 693, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Massilia niastensis", "strain": "strain=DSM 21313", "accession": "GCA_000382345.1", "taxid": 544911, "species_taxid": 544911, "relation_to_type": "type", "validated": true, "ani": 76.3768, "matched_fragments": 71, "total_fragments": 693, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Janthinobacterium tructae", "strain": "strain=SNU WT3", "accession": "GCA_006517255.1", "taxid": 2590869, "species_taxid": 2590869, "relation_to_type": "type", "validated": true, "ani": 76.3031, "matched_fragments": 69, "total_fragments": 693, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Herbaspirillum hiltneri", "strain": "strain=N3", "accession": "GCA_001267925.1", "taxid": 341045, "species_taxid": 341045, 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