{ "type": "genome", "identifier": "GCA_018971565.1", "organism": "Rhodospirillales bacterium", "title": "Rhodospirillales bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "Sun Yat-sen University", "publication": [ {} ], "properties": { "assembly_accession": "GCA_018971565.1", "bioproject": "PRJNA675967", "biosample": "SAMN16745475", "wgs_master": "JAGXAO000000000.1", "refseq_category": "na", "taxid": "2026786", "species_taxid": "2026786", "organism_name": "Rhodospirillales bacterium", "infraspecific_name": "", "isolate": "REEB79", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/06/21", "asm_name": "ASM1897156v1", "submitter": "Sun Yat-sen University", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/971/565/GCA_018971565.1_ASM1897156v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-06-21", "dateModified": "2021-06-21", "datePublished": "2021-06-21", "_annotation": { "sample_count": 1, "sample_organism": [ "Rhodospirillales bacterium" ], "sample_taxid": [ "2026786" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China:Jiangxi" ], "sample_host_location_id": [], "data_size": "0.610 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 91.15, "contamination": 9.72, "strain_heterogeneity": 83.33, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2155064", "Number of Sequences": "166", "Longest Sequences (bp)": "107901", "N50 (bp)": "18819", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "60.0", "Number of CDSs": "1915", "Average Protein Length": "314.5", "Coding Ratio (%)": "83.8", "Number of rRNAs": "0", "Number of tRNAs": "38", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Acidocella facilis", "strain": "strain=ATCC 35904", "accession": "GCA_000687875.1", "taxid": 525, "species_taxid": 525, "relation_to_type": "type", "validated": true, "ani": 80.9715, "matched_fragments": 415, "total_fragments": 634, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acidocella aminolytica", "strain": "strain=DSM 11237", "accession": "GCA_900129125.1", "taxid": 33998, "species_taxid": 33998, "relation_to_type": "type", "validated": true, "ani": 80.3511, "matched_fragments": 370, "total_fragments": 634, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acidocella aromatica", "strain": "strain=DSM 27026", "accession": "GCA_014201825.1", "taxid": 1303579, "species_taxid": 1303579, "relation_to_type": "type", "validated": true, "ani": 79.3932, "matched_fragments": 290, "total_fragments": 634, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acidiphilium multivorum", "strain": "strain=AIU301", "accession": "GCA_000964345.1", "taxid": 62140, "species_taxid": 62140, "relation_to_type": "type", "validated": true, "ani": 77.2893, "matched_fragments": 110, "total_fragments": 634, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acidiphilium multivorum", "strain": "strain=AIU301", "accession": "GCA_000202835.1", "taxid": 62140, "species_taxid": 62140, "relation_to_type": "type", "validated": true, "ani": 77.2344, "matched_fragments": 114, "total_fragments": 634, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodovastum atsumiense", "strain": "strain=G2-11", "accession": "GCA_937425535.1", "taxid": 504468, "species_taxid": 504468, "relation_to_type": "type", "validated": true, "ani": 76.9714, "matched_fragments": 100, "total_fragments": 634, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodopila globiformis", "strain": "strain=DSM 161", "accession": "GCA_002937115.1", "taxid": 1071, "species_taxid": 1071, "relation_to_type": "type", "validated": true, "ani": 76.8057, "matched_fragments": 99, "total_fragments": 634, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseomonas mucosa", "strain": "strain=NCTC13291", "accession": "GCA_900455935.1", "taxid": 207340, "species_taxid": 207340, "relation_to_type": "type", "validated": true, "ani": 76.7708, "matched_fragments": 110, "total_fragments": 634, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseomonas mucosa", "strain": "strain=ATCC BAA-692", "accession": "GCA_000622225.1", "taxid": 207340, "species_taxid": 207340, "relation_to_type": "type", "validated": true, "ani": 76.7476, "matched_fragments": 109, "total_fragments": 634, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseococcus thiosulfatophilus", "strain": "strain=RB-3", "accession": "GCA_017311575.1", "taxid": 35813, "species_taxid": 35813, "relation_to_type": "type", "validated": true, "ani": 76.5086, "matched_fragments": 101, "total_fragments": 634, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseomonas rosea", "strain": "strain=DSM 14916", "accession": "GCA_900141905.1", "taxid": 198092, "species_taxid": 198092, "relation_to_type": "type", "validated": true, "ani": 76.3967, "matched_fragments": 87, "total_fragments": 634, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Belnapia arida", "strain": "strain=T18", "accession": "GCA_016773205.1", "taxid": 2804533, "species_taxid": 2804533, "relation_to_type": "type", "validated": true, "ani": 76.176, "matched_fragments": 88, "total_fragments": 634, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseomonas deserti", "strain": "strain=M3", "accession": "GCA_001982615.1", "taxid": 1817963, "species_taxid": 1817963, "relation_to_type": "type", "validated": true, "ani": 76.1626, "matched_fragments": 95, "total_fragments": 634, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseomonas aerilata", "strain": "strain=DSM 19363", "accession": "GCA_000711725.1", "taxid": 452982, "species_taxid": 452982, "relation_to_type": "type", "validated": true, "ani": 76.1429, "matched_fragments": 79, "total_fragments": 634, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 91.15, "contamination": 9.72, "strain_heterogeneity": 83.33 }, "gtdb_result": [ { "accession": "GCA_018971565.1", "gtdb_species": "s__Acidocella sp018971565", "ani": 100.0, "matched_fragments": 629, "total_fragments": 634, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Acidocella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCA_018971905.1", "gtdb_species": "s__Acidocella sp018971905", "ani": 83.839, "matched_fragments": 372, "total_fragments": 634, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Acidocella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_018971725.1", "gtdb_species": "s__Acidocella sp018971725", "ani": 83.5724, "matched_fragments": 386, "total_fragments": 634, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Acidocella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000687875.1", "gtdb_species": "s__Acidocella facilis", "ani": 80.9869, "matched_fragments": 414, "total_fragments": 634, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Acidocella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.02", "min_intra_species_ani": "98.02", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.93", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_900129125.1", "gtdb_species": "s__Acidocella aminolytica", "ani": 80.3353, "matched_fragments": 371, "total_fragments": 634, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Acidocella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.99", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.99", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_014201825.1", "gtdb_species": "s__Acidocella aromatica", "ani": 79.4096, "matched_fragments": 289, "total_fragments": 634, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Acidocella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_013044125.1", "gtdb_species": "s__Acidocella sp013044125", "ani": 78.3205, "matched_fragments": 180, "total_fragments": 634, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Acidocella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.149, "cell_length": 0.277, "doubling_h": 0.851, "growth_tmp": 29.223, "optimum_tmp": 29.873, "optimum_ph": 6.714, "genome_size": 4309033.9, "gc_content": 61.073, "coding_genes": 3753.536, "rRNA16S_genes": 4.275, "tRNA_genes": 58.848, "gram_stain": 0.0, "sporulation": 0.027, "motility": 0.719, "range_salinity": 0.444, "facultative_respiration": 0.083, "anaerobic_respiration": 0.064, "aerobic_respiration": 0.852, "mesophilic_range_tmp": 0.942, "thermophilic_range_tmp": 0.028, "psychrophilic_range_tmp": 0.028, "bacillus_cell_shape": 0.623, "coccus_cell_shape": 0.085, "filament_cell_shape": 0.008, "coccobacillus_cell_shape": 0.059, "vibrio_cell_shape": 0.017, "spiral_cell_shape": 0.205 }, "_gtdb_taxon": [ "d__Bacteria", "p__Pseudomonadota", "c__Alphaproteobacteria", "o__Acetobacterales", "f__Acetobacteraceae", "g__Acidocella", "s__Acidocella sp018971565" ], "_genome_taxon": [ "Rhodospirillales", "bacterium", "d__Bacteria", "p__Pseudomonadota", "c__Alphaproteobacteria", "o__Acetobacterales", "f__Acetobacteraceae", "g__Acidocella", "s__Acidocella sp018971565", "Bacteria", "Pseudomonadota", "Alphaproteobacteria", "Acetobacterales", "Acetobacteraceae", "Acidocella", "Acidocella", "sp018971565" ], "_meo": [ { "id": "MEO_0000034", "label": "acid mine drainage" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }