{
    "type": "genome",
    "identifier": "GCA_019113545.1",
    "organism": "Candidatus Jeotgalicoccus stercoravium",
    "title": "Candidatus Jeotgalicoccus stercoravium",
    "description": "derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "Quadram Institutte",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_019113545.1",
        "bioproject": "PRJNA543206",
        "biosample": "SAMN15816765",
        "wgs_master": "DXHB00000000.1",
        "refseq_category": "na",
        "taxid": "2838629",
        "species_taxid": "2838629",
        "organism_name": "Candidatus Jeotgalicoccus stercoravium",
        "infraspecific_name": "",
        "isolate": "CHK148-7025",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2021/07/05",
        "asm_name": "ASM1911354v1",
        "submitter": "Quadram Institutte",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/113/545/GCA_019113545.1_ASM1911354v1",
        "excluded_from_refseq": "derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2021-07-05",
    "dateModified": "2021-07-05",
    "datePublished": "2021-07-05",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Candidatus Jeotgalicoccus stercoravium"
        ],
        "sample_taxid": [
            "2838629"
        ],
        "sample_host_organism": [
            "Gallus gallus"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "not applicable"
        ],
        "sample_host_location_id": [],
        "data_size": "0.505 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 4.17,
        "strain_heterogeneity": 100.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "1762718",
        "Number of Sequences": "212",
        "Longest Sequences (bp)": "87759",
        "N50 (bp)": "9471",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "36.0",
        "Number of CDSs": "1721",
        "Average Protein Length": "268.3",
        "Coding Ratio (%)": "78.6",
        "Number of rRNAs": "2",
        "Number of tRNAs": "15",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Jeotgalicoccus meleagridis",
                "strain": "strain=CIP 111649",
                "accession": "GCA_903994045.1",
                "taxid": 2759181,
                "species_taxid": 2759181,
                "relation_to_type": "type",
                "validated": true,
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                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Jeotgalicoccus marinus",
                "strain": "strain=DSM 19772",
                "accession": "GCA_000425825.1",
                "taxid": 516700,
                "species_taxid": 516700,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.0456,
                "matched_fragments": 272,
                "total_fragments": 489,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Jeotgalicoccus coquinae",
                "strain": "strain=CCM 7682",
                "accession": "GCA_014635225.1",
                "taxid": 709509,
                "species_taxid": 709509,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.7441,
                "matched_fragments": 161,
                "total_fragments": 489,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Jeotgalicoccus coquinae",
                "strain": "strain=CIP 111751",
                "accession": "GCA_903994065.1",
                "taxid": 709509,
                "species_taxid": 709509,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.6719,
                "matched_fragments": 164,
                "total_fragments": 489,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Jeotgalicoccus psychrophilus",
                "strain": "strain=DSM 19085",
                "accession": "GCA_000425845.1",
                "taxid": 157228,
                "species_taxid": 157228,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.6419,
                "matched_fragments": 171,
                "total_fragments": 489,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Jeotgalicoccus aerolatus",
                "strain": "strain=CIP 111750",
                "accession": "GCA_903994055.1",
                "taxid": 709510,
                "species_taxid": 709510,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.5748,
                "matched_fragments": 177,
                "total_fragments": 489,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Jeotgalicoccus aerolatus",
                "strain": "strain=DSM 22420",
                "accession": "GCA_017873755.1",
                "taxid": 709510,
                "species_taxid": 709510,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.5463,
                "matched_fragments": 175,
                "total_fragments": 489,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Jeotgalicoccus aerolatus",
                "strain": "strain=CCM 7679",
                "accession": "GCA_014635205.1",
                "taxid": 709510,
                "species_taxid": 709510,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.4668,
                "matched_fragments": 175,
                "total_fragments": 489,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 4.17,
            "strain_heterogeneity": 100.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_903994045.1",
                "gtdb_species": "s__Jeotgalicoccus meleagridis",
                "ani": 98.5921,
                "matched_fragments": 462,
                "total_fragments": 489,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Staphylococcales;f__Salinicoccaceae;g__Jeotgalicoccus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.59",
                "min_intra_species_ani": "98.59",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.94",
                "num_clustered_genomes": 2,
                "status": "conclusive"
            },
            {
                "accession": "GCF_000425825.1",
                "gtdb_species": "s__Jeotgalicoccus marinus",
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                "total_fragments": 489,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Staphylococcales;f__Salinicoccaceae;g__Jeotgalicoccus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.04",
                "min_intra_species_ani": "99.00",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.94",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_000756715.1",
                "gtdb_species": "s__Jeotgalicoccus saudimassiliensis",
                "ani": 78.6632,
                "matched_fragments": 149,
                "total_fragments": 489,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Staphylococcales;f__Salinicoccaceae;g__Jeotgalicoccus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000425845.1",
                "gtdb_species": "s__Jeotgalicoccus psychrophilus",
                "ani": 78.6419,
                "matched_fragments": 171,
                "total_fragments": 489,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Staphylococcales;f__Salinicoccaceae;g__Jeotgalicoccus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.52",
                "min_intra_species_ani": "97.52",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.90",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_014207425.1",
                "gtdb_species": "s__Jeotgalicoccus coquinae",
                "ani": 78.6314,
                "matched_fragments": 167,
                "total_fragments": 489,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Staphylococcales;f__Salinicoccaceae;g__Jeotgalicoccus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_003513765.1",
                "gtdb_species": "s__Jeotgalicoccus sp003513765",
                "ani": 78.5865,
                "matched_fragments": 160,
                "total_fragments": 489,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Staphylococcales;f__Salinicoccaceae;g__Jeotgalicoccus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_014635205.1",
                "gtdb_species": "s__Jeotgalicoccus aerolatus",
                "ani": 78.4748,
                "matched_fragments": 174,
                "total_fragments": 489,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Staphylococcales;f__Salinicoccaceae;g__Jeotgalicoccus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.67",
                "min_intra_species_ani": "99.03",
                "mean_intra_species_af": "0.98",
                "min_intra_species_af": "0.93",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCA_004570955.1",
                "gtdb_species": "s__Jeotgalicoccus nanhaiensis",
                "ani": 78.4385,
                "matched_fragments": 166,
                "total_fragments": 489,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Staphylococcales;f__Salinicoccaceae;g__Jeotgalicoccus",
                "ani_circumscription_radius": 96.2898,
                "mean_intra_species_ani": "99.28",
                "min_intra_species_ani": "98.57",
                "mean_intra_species_af": "0.98",
                "min_intra_species_af": "0.96",
                "num_clustered_genomes": 3,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.039,
        "cell_length": -0.027,
        "doubling_h": null,
        "growth_tmp": 29.1,
        "optimum_tmp": 32.5,
        "optimum_ph": 7.625,
        "genome_size": 2231323.0,
        "gc_content": 40.2,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": 1.0,
        "sporulation": 0.0,
        "motility": 0.0,
        "range_salinity": 1.0,
        "facultative_respiration": 0.375,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 0.625,
        "mesophilic_range_tmp": 0.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 1.0,
        "bacillus_cell_shape": 0.0,
        "coccus_cell_shape": 1.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Bacillota",
        "c__Bacilli",
        "o__Staphylococcales",
        "f__Salinicoccaceae",
        "g__Jeotgalicoccus",
        "s__Jeotgalicoccus meleagridis"
    ],
    "_genome_taxon": [
        "Candidatus",
        "Jeotgalicoccus",
        "stercoravium",
        "d__Bacteria",
        "p__Bacillota",
        "c__Bacilli",
        "o__Staphylococcales",
        "f__Salinicoccaceae",
        "g__Jeotgalicoccus",
        "s__Jeotgalicoccus meleagridis",
        "Bacteria",
        "Bacillota",
        "Bacilli",
        "Staphylococcales",
        "Salinicoccaceae",
        "Jeotgalicoccus",
        "Jeotgalicoccus",
        "meleagridis"
    ],
    "_meo": [
        {
            "id": "MEO_0000054",
            "label": "feces"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}