{ "type": "genome", "identifier": "GCA_019192585.1", "organism": "Devosiaceae bacterium MH13", "title": "Devosiaceae bacterium MH13", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "University of Southern California", "publication": [ {} ], "properties": { "assembly_accession": "GCA_019192585.1", "bioproject": "PRJNA719568", "biosample": "SAMN18613311", "wgs_master": "JAHCMG000000000.1", "refseq_category": "na", "taxid": "3024194", "species_taxid": "3024194", "organism_name": "Devosiaceae bacterium MH13", "infraspecific_name": "", "isolate": "MH13", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/07/09", "asm_name": "ASM1919258v1", "submitter": "University of Southern California", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/192/585/GCA_019192585.1_ASM1919258v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-07-09", "dateModified": "2021-07-09", "datePublished": "2021-07-09", "_annotation": { "sample_count": 1, "sample_organism": [ "Devosiaceae bacterium" ], "sample_taxid": [ "2845825" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Pacific Ocean: Station ALOHA" ], "sample_host_location_id": [], "data_size": "0.886 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 100.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "3159117", "Number of Sequences": "319", "Longest Sequences (bp)": "61281", "N50 (bp)": "14691", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "63.3", "Number of CDSs": "2730", "Average Protein Length": "304.0", "Coding Ratio (%)": "78.8", "Number of rRNAs": "0", "Number of tRNAs": "38", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Rhodobium orientis", "strain": "strain=DSM 11290", "accession": "GCA_014197785.1", "taxid": 34017, "species_taxid": 34017, "relation_to_type": "type", "validated": true, "ani": 76.7488, "matched_fragments": 131, "total_fragments": 889, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Stappia stellulata", "strain": "strain=DSM 5886", "accession": "GCA_000423705.1", "taxid": 71235, "species_taxid": 71235, "relation_to_type": "type", "validated": true, "ani": 76.7376, "matched_fragments": 103, "total_fragments": 889, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Salinarimonas rosea", "strain": "strain=DSM 21201", "accession": "GCA_000429045.1", "taxid": 552063, "species_taxid": 552063, "relation_to_type": "type", "validated": true, "ani": 76.7161, "matched_fragments": 112, "total_fragments": 889, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodobium orientis", "strain": "strain=DSM 11290", "accession": "GCA_003258835.1", "taxid": 34017, "species_taxid": 34017, "relation_to_type": "type", "validated": true, "ani": 76.7135, "matched_fragments": 128, "total_fragments": 889, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodobium orientis", "strain": "strain=DSM 11290", "accession": "GCA_016653375.1", "taxid": 34017, "species_taxid": 34017, "relation_to_type": "type", "validated": true, "ani": 76.7007, "matched_fragments": 132, "total_fragments": 889, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pleomorphomonas diazotrophica", "strain": "strain=R5-392", "accession": "GCA_900114935.1", "taxid": 1166257, "species_taxid": 1166257, "relation_to_type": "type", "validated": true, "ani": 76.6837, "matched_fragments": 85, "total_fragments": 889, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pleomorphomonas diazotrophica", "strain": "strain=R5-392", "accession": "GCA_002844595.1", "taxid": 1166257, "species_taxid": 1166257, "relation_to_type": "type", "validated": true, "ani": 76.6694, "matched_fragments": 86, "total_fragments": 889, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium oryzihabitans", "strain": "strain=TER-1", "accession": "GCA_004004555.2", "taxid": 2499852, "species_taxid": 2499852, "relation_to_type": "type", "validated": true, "ani": 76.6552, "matched_fragments": 96, "total_fragments": 889, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Breoghania corrubedonensis", "strain": "strain=DSM 23382", "accession": "GCA_003053845.1", "taxid": 665038, "species_taxid": 665038, "relation_to_type": "type", "validated": true, "ani": 76.5953, "matched_fragments": 108, "total_fragments": 889, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium gnaphalii", "strain": "strain=DSM 24027", "accession": "GCA_022179205.1", "taxid": 1010610, "species_taxid": 1010610, "relation_to_type": "type", "validated": true, "ani": 76.5773, "matched_fragments": 67, "total_fragments": 889, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium gnaphalii", "strain": "strain=NBRC 107716", "accession": "GCA_007992215.1", "taxid": 1010610, "species_taxid": 1010610, "relation_to_type": "type", "validated": true, "ani": 76.5524, "matched_fragments": 68, "total_fragments": 889, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pannonibacter carbonis", "strain": "strain=Q4.6", "accession": "GCA_003012935.1", "taxid": 2067569, "species_taxid": 2067569, "relation_to_type": "type", "validated": true, "ani": 76.5497, "matched_fragments": 109, "total_fragments": 889, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseibium suaedae", "strain": "strain=DSM 22153", "accession": "GCA_900142725.1", "taxid": 735517, "species_taxid": 735517, "relation_to_type": "type", "validated": true, "ani": 76.5206, "matched_fragments": 95, "total_fragments": 889, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseibium polysiphoniae", "strain": "strain=KACC 19711", "accession": "GCA_014842925.1", "taxid": 2571221, "species_taxid": 2571221, "relation_to_type": "type", "validated": true, "ani": 76.5024, "matched_fragments": 73, "total_fragments": 889, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kaistia adipata", "strain": "strain=DSM 17808", "accession": "GCA_000423225.1", "taxid": 166954, "species_taxid": 166954, "relation_to_type": "type", "validated": true, "ani": 76.4646, "matched_fragments": 124, "total_fragments": 889, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium aeschynomenes", "strain": "strain=83002", "accession": "GCA_013178945.1", "taxid": 2734909, "species_taxid": 2734909, "relation_to_type": "type", "validated": true, "ani": 76.4524, "matched_fragments": 104, "total_fragments": 889, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pannonibacter phragmitetus", "strain": "strain=NCTC13350", "accession": "GCA_900454465.1", "taxid": 121719, "species_taxid": 121719, "relation_to_type": "suspected-type", "validated": true, "ani": 76.4243, "matched_fragments": 110, "total_fragments": 889, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodoplanes roseus", "strain": "strain=DSM 5909", "accession": "GCA_003258865.1", "taxid": 29409, "species_taxid": 29409, "relation_to_type": "type", "validated": true, "ani": 76.3854, "matched_fragments": 104, "total_fragments": 889, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium bullatum", "strain": "strain=LMG 24788", "accession": "GCA_014845095.1", "taxid": 570505, "species_taxid": 570505, "relation_to_type": "type", "validated": true, "ani": 76.3764, "matched_fragments": 77, "total_fragments": 889, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pannonibacter indicus", "strain": "strain=DSM 23407", "accession": "GCA_001517385.1", "taxid": 466044, "species_taxid": 466044, "relation_to_type": "type", "validated": true, "ani": 76.3366, "matched_fragments": 91, "total_fragments": 889, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pannonibacter indicus", "strain": "strain=DSM 23407", "accession": "GCA_001418225.1", "taxid": 466044, "species_taxid": 466044, "relation_to_type": "type", "validated": true, "ani": 76.3366, "matched_fragments": 91, "total_fragments": 889, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium bullatum", "strain": "strain=DSM 21893", "accession": "GCA_022179105.1", "taxid": 570505, "species_taxid": 570505, "relation_to_type": "type", "validated": true, "ani": 76.3254, "matched_fragments": 83, "total_fragments": 889, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pannonibacter phragmitetus", "strain": "strain=DSM 14782", "accession": "GCA_000382365.1", "taxid": 121719, "species_taxid": 121719, "relation_to_type": "suspected-type", "validated": true, "ani": 76.2706, "matched_fragments": 109, "total_fragments": 889, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium goesingense", "strain": "strain=DSM 21331", "accession": "GCA_022179225.1", "taxid": 243690, "species_taxid": 243690, "relation_to_type": "type", "validated": true, "ani": 76.2613, "matched_fragments": 77, "total_fragments": 889, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium terricola", "strain": "strain=17Sr1-39", "accession": "GCA_006151805.1", "taxid": 2583531, "species_taxid": 2583531, "relation_to_type": "type", "validated": true, "ani": 76.2543, "matched_fragments": 118, "total_fragments": 889, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium jeotgali", "strain": "strain=LMG 23639", "accession": "GCA_022179345.1", "taxid": 381630, "species_taxid": 381630, "relation_to_type": "type", "validated": true, "ani": 76.2406, "matched_fragments": 86, "total_fragments": 889, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pleomorphomonas oryzae", "strain": "strain=DSM 16300", "accession": "GCA_000422965.1", "taxid": 261934, "species_taxid": 261934, "relation_to_type": "type", "validated": true, "ani": 76.2322, "matched_fragments": 86, "total_fragments": 889, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kaustia mangrovi", "strain": "strain=R1DC25", "accession": "GCA_015482775.1", "taxid": 2593653, "species_taxid": 2593653, "relation_to_type": "type", "validated": true, "ani": 76.1694, "matched_fragments": 98, "total_fragments": 889, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Azospirillum brasilense", "strain": "strain=Sp 7", "accession": "GCA_008274945.1", "taxid": 192, "species_taxid": 192, "relation_to_type": "type", "validated": true, "ani": 76.0701, "matched_fragments": 73, "total_fragments": 889, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Azospirillum brasilense", "strain": "strain=Sp 7", "accession": "GCA_007827425.1", "taxid": 192, "species_taxid": 192, "relation_to_type": "type", "validated": true, "ani": 76.0612, "matched_fragments": 74, "total_fragments": 889, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Azospirillum brasilense", "strain": "strain=Sp 7", "accession": "GCA_002027385.1", "taxid": 192, "species_taxid": 192, "relation_to_type": "type", "validated": true, "ani": 76.0094, "matched_fragments": 71, "total_fragments": 889, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodovastum atsumiense", "strain": "strain=G2-11", "accession": "GCA_937425535.1", "taxid": 504468, "species_taxid": 504468, "relation_to_type": "type", "validated": true, "ani": 75.6393, "matched_fragments": 53, "total_fragments": 889, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 100.0 }, "gtdb_result": [ { "accession": "GCA_019192585.1", "gtdb_species": "s__MH13 sp019192585", "ani": 100.0, "matched_fragments": 885, "total_fragments": 889, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__MH13;g__MH13", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { 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sp008040045", "ani": 76.7441, "matched_fragments": 91, "total_fragments": 889, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Beijerinckiaceae;g__Methylobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.25", "min_intra_species_ani": "98.17", "mean_intra_species_af": "0.85", "min_intra_species_af": "0.85", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_003610575.1", "gtdb_species": "s__Stappia sp003610575", "ani": 76.737, "matched_fragments": 132, "total_fragments": 889, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Stappiaceae;g__Stappia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.18", "min_intra_species_ani": "98.18", "mean_intra_species_af": "0.97", "min_intra_species_af": "0.97", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_003258835.1", "gtdb_species": "s__Rhodobium orientis", "ani": 76.7331, 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