{ "type": "genome", "identifier": "GCA_019233655.1", "organism": "Actinomycetota bacterium", "title": "Actinomycetota bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "The Genomics for Climate Change Research Center (GCCRC)", "publication": [ {} ], "properties": { "assembly_accession": "GCA_019233655.1", "bioproject": "PRJNA687273", "biosample": "SAMN17140295", "wgs_master": "JAFAMG000000000.1", "refseq_category": "na", "taxid": "2900548", "species_taxid": "2900548", "organism_name": "Actinomycetota bacterium", "infraspecific_name": "", "isolate": "CP_BE_RX_R1_2", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/07/15", "asm_name": "ASM1923365v1", "submitter": "The Genomics for Climate Change Research Center (GCCRC)", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/233/655/GCA_019233655.1_ASM1923365v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-07-15", "dateModified": "2021-07-15", "datePublished": "2021-07-15", "_annotation": { "sample_count": 1, "sample_organism": [ "Actinomycetia bacterium" ], "sample_taxid": [ "1883427" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Brazil: Minas Gerais" ], "sample_host_location_id": [], "data_size": "0.524 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 76.47, "contamination": 8.85, "strain_heterogeneity": 66.67, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "1986431", "Number of Sequences": "340", "Longest Sequences (bp)": "29560", "N50 (bp)": "6899", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "72.1", "Number of CDSs": "1821", "Average Protein Length": "270.4", "Coding Ratio (%)": "74.4", "Number of rRNAs": "0", "Number of tRNAs": "28", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Gaiella occulta", "strain": "strain=F2-233", "accession": "GCA_003351045.1", "taxid": 1002870, "species_taxid": 1002870, "relation_to_type": "type", "validated": true, "ani": 78.4532, "matched_fragments": 267, "total_fragments": 489, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Conexibacter arvalis", "strain": "strain=DSM 23288", "accession": "GCA_014199525.1", "taxid": 912552, "species_taxid": 912552, "relation_to_type": "type", "validated": true, "ani": 76.202, "matched_fragments": 250, "total_fragments": 489, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Conexibacter woesei", "strain": "strain=DSM 14684", "accession": "GCA_000025265.1", "taxid": 191495, "species_taxid": 191495, "relation_to_type": "type", "validated": true, "ani": 76.0063, "matched_fragments": 244, "total_fragments": 489, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Miltoncostaea oceani", "strain": "strain=SCSIO 61214", "accession": "GCA_018141545.1", "taxid": 2843216, "species_taxid": 2843216, "relation_to_type": "type", "validated": true, "ani": 75.9866, "matched_fragments": 148, "total_fragments": 489, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraconexibacter algicola", "strain": "strain=Seoho-28", "accession": "GCA_003044185.1", "taxid": 2133960, "species_taxid": 2133960, "relation_to_type": "type", "validated": true, "ani": 75.9832, "matched_fragments": 186, "total_fragments": 489, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Capillimicrobium parvum", "strain": "strain=0166_1", "accession": "GCA_021172045.1", "taxid": 2884022, "species_taxid": 2884022, "relation_to_type": "type", "validated": true, "ani": 75.9602, "matched_fragments": 206, "total_fragments": 489, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Miltoncostaea marina", "strain": "strain=SCSIO 60955", "accession": "GCA_018141525.1", "taxid": 2843215, "species_taxid": 2843215, "relation_to_type": "type", "validated": true, "ani": 75.8194, "matched_fragments": 159, "total_fragments": 489, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Phytohabitans flavus", "strain": "strain=NBRC 107702", "accession": "GCA_011764545.1", "taxid": 1076124, "species_taxid": 1076124, "relation_to_type": "type", "validated": true, "ani": 75.2811, "matched_fragments": 137, "total_fragments": 489, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Modestobacter marinus", "strain": "strain=DSM 45201", "accession": "GCA_011758655.1", "taxid": 477641, "species_taxid": 477641, "relation_to_type": "type", "validated": true, "ani": 75.2028, "matched_fragments": 105, "total_fragments": 489, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Frankia canadensis", "strain": "", "accession": "GCA_900197875.1", "taxid": 1836972, "species_taxid": 1836972, "relation_to_type": "type", "validated": true, "ani": 75.1896, "matched_fragments": 103, "total_fragments": 489, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Modestobacter caceresii", "strain": "strain=KNN 45-2b", "accession": "GCA_000761485.1", "taxid": 1522368, "species_taxid": 1522368, "relation_to_type": "type", "validated": true, "ani": 75.187, "matched_fragments": 86, "total_fragments": 489, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nakamurella leprariae", "strain": "strain=YIM 132084", "accession": "GCA_016918035.1", "taxid": 2803911, "species_taxid": 2803911, "relation_to_type": "type", "validated": true, "ani": 75.1591, "matched_fragments": 68, "total_fragments": 489, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides euryhalodurans", "strain": "strain=MMS17-SY117", "accession": "GCA_004564375.1", "taxid": 2518370, "species_taxid": 2518370, "relation_to_type": "type", "validated": true, "ani": 75.1202, "matched_fragments": 98, "total_fragments": 489, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Phytohabitans suffuscus", "strain": "strain=NBRC 105367", "accession": "GCA_011764565.1", "taxid": 624315, "species_taxid": 624315, "relation_to_type": "type", "validated": true, "ani": 75.0835, "matched_fragments": 150, "total_fragments": 489, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Azospirillum doebereinerae", "strain": "strain=GSF71", "accession": "GCA_003989665.1", "taxid": 92933, "species_taxid": 92933, "relation_to_type": "type", "validated": true, "ani": 75.0413, "matched_fragments": 67, "total_fragments": 489, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amycolatopsis camponoti", "strain": "strain=A23", "accession": "GCA_902497555.1", "taxid": 2606593, "species_taxid": 2606593, "relation_to_type": "type", "validated": true, "ani": 75.009, "matched_fragments": 169, "total_fragments": 489, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nitriliruptor alkaliphilus", "strain": "strain=DSM 45188", "accession": "GCA_000969705.1", "taxid": 427918, "species_taxid": 427918, "relation_to_type": "type", "validated": true, "ani": 74.9837, "matched_fragments": 111, "total_fragments": 489, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Propioniciclava soli", "strain": "strain=YIM S02567", "accession": "GCA_014858005.1", "taxid": 2775081, "species_taxid": 2775081, "relation_to_type": "type", "validated": true, "ani": 74.9731, "matched_fragments": 71, "total_fragments": 489, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Phytohabitans houttuyneae", "strain": "strain=NBRC 108639", "accession": "GCA_011764425.1", "taxid": 1076126, "species_taxid": 1076126, "relation_to_type": "type", "validated": true, "ani": 74.9215, "matched_fragments": 148, "total_fragments": 489, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ilumatobacter coccineus", "strain": "strain=YM16-304", "accession": "GCA_000348785.1", "taxid": 467094, "species_taxid": 467094, "relation_to_type": "type", "validated": true, "ani": 74.7077, "matched_fragments": 51, "total_fragments": 489, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 76.47, "contamination": 8.85, "strain_heterogeneity": 66.67 }, "gtdb_result": [ { "accession": "GCA_019236545.1", "gtdb_species": "s__Palsa-739 sp019236545", "ani": 98.1889, "matched_fragments": 401, "total_fragments": 489, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Thermoleophilia;o__Gaiellales;f__Gaiellaceae;g__Palsa-739", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.19", "min_intra_species_ani": "98.19", "mean_intra_species_af": "0.82", "min_intra_species_af": "0.82", "num_clustered_genomes": 2, "status": "conclusive" }, { "accession": "GCA_003161615.1", "gtdb_species": "s__Palsa-739 sp003161615", "ani": 82.0712, "matched_fragments": 294, "total_fragments": 489, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Thermoleophilia;o__Gaiellales;f__Gaiellaceae;g__Palsa-739", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_005883365.1", "gtdb_species": "s__Palsa-739 sp005883365", "ani": 81.4174, "matched_fragments": 255, "total_fragments": 489, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Thermoleophilia;o__Gaiellales;f__Gaiellaceae;g__Palsa-739", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_003139545.1", "gtdb_species": "s__Palsa-739 sp003139545", "ani": 81.1073, "matched_fragments": 329, "total_fragments": 489, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Thermoleophilia;o__Gaiellales;f__Gaiellaceae;g__Palsa-739", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_019234175.1", "gtdb_species": "s__Palsa-739 sp019234175", "ani": 81.051, "matched_fragments": 238, "total_fragments": 489, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Thermoleophilia;o__Gaiellales;f__Gaiellaceae;g__Palsa-739", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_005884575.1", "gtdb_species": "s__AC-16 sp005884575", "ani": 80.3587, "matched_fragments": 348, "total_fragments": 489, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Thermoleophilia;o__Gaiellales;f__Gaiellaceae;g__AC-16", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_003152275.1", "gtdb_species": "s__Palsa-739 sp003152275", "ani": 79.8683, "matched_fragments": 296, "total_fragments": 489, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Thermoleophilia;o__Gaiellales;f__Gaiellaceae;g__Palsa-739", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.63", "min_intra_species_ani": "96.63", "mean_intra_species_af": "0.81", "min_intra_species_af": "0.81", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_005885565.1", "gtdb_species": "s__AC-50 sp005885565", "ani": 79.2166, "matched_fragments": 255, "total_fragments": 489, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Thermoleophilia;o__Gaiellales;f__Gaiellaceae;g__AC-50", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_013812235.1", "gtdb_species": "s__JACCTU01 sp013812235", "ani": 78.8448, "matched_fragments": 154, "total_fragments": 489, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Thermoleophilia;o__Gaiellales;f__Gaiellaceae;g__JACCTU01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_005883335.1", "gtdb_species": "s__AC-32 sp005883335", "ani": 78.8074, "matched_fragments": 220, "total_fragments": 489, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Thermoleophilia;o__Gaiellales;f__Gaiellaceae;g__AC-32", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_005883235.1", "gtdb_species": "s__AC-50 sp005883235", "ani": 78.6561, "matched_fragments": 162, "total_fragments": 489, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Thermoleophilia;o__Gaiellales;f__Gaiellaceae;g__AC-50", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_013362295.1", "gtdb_species": "s__PALSA-600 sp013362295", "ani": 78.6371, "matched_fragments": 246, "total_fragments": 489, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Thermoleophilia;o__Gaiellales;f__Gaiellaceae;g__PALSA-600", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_005885085.1", "gtdb_species": "s__3-1-20CM-4-69-9 sp005885085", "ani": 78.4693, "matched_fragments": 206, "total_fragments": 489, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Thermoleophilia;o__Gaiellales;f__Gaiellaceae;g__3-1-20CM-4-69-9", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_005884155.1", "gtdb_species": "s__AC-32 sp005884155", "ani": 78.3604, "matched_fragments": 195, "total_fragments": 489, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Thermoleophilia;o__Gaiellales;f__Gaiellaceae;g__AC-32", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_014534295.1", "gtdb_species": "s__JACVRU01 sp014534295", "ani": 78.2533, "matched_fragments": 161, "total_fragments": 489, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Thermoleophilia;o__Gaiellales;f__Gaiellaceae;g__JACVRU01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_013697275.1", "gtdb_species": "s__JACVSB01 sp013697275", "ani": 78.0246, "matched_fragments": 150, "total_fragments": 489, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Thermoleophilia;o__Gaiellales;f__Gaiellaceae;g__JACVSB01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_014534345.1", "gtdb_species": "s__JACVRR01 sp014534345", "ani": 77.5704, "matched_fragments": 192, "total_fragments": 489, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Thermoleophilia;o__Gaiellales;f__Gaiellaceae;g__JACVRR01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_005888335.1", "gtdb_species": "s__VAWY01 sp005888335", "ani": 76.679, "matched_fragments": 234, "total_fragments": 489, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Thermoleophilia;o__Solirubrobacterales;f__Solirubrobacteraceae;g__VAWY01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": null, "doubling_h": null, "growth_tmp": null, "optimum_tmp": null, "optimum_ph": null, "genome_size": null, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": null, "sporulation": null, "motility": null, "range_salinity": null, "facultative_respiration": null, "anaerobic_respiration": null, "aerobic_respiration": null, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": null, "coccus_cell_shape": null, "filament_cell_shape": null, "coccobacillus_cell_shape": null, "vibrio_cell_shape": null, "spiral_cell_shape": null }, "_gtdb_taxon": [ "d__Bacteria", "p__Actinomycetota", "c__Thermoleophilia", "o__Gaiellales", "f__Gaiellaceae", "g__Palsa-739", "s__Palsa-739 sp019236545" ], "_genome_taxon": [ "Actinomycetota", "bacterium", "d__Bacteria", "p__Actinomycetota", "c__Thermoleophilia", "o__Gaiellales", "f__Gaiellaceae", "g__Palsa-739", "s__Palsa-739 sp019236545", "Bacteria", "Actinomycetota", "Thermoleophilia", "Gaiellales", "Gaiellaceae", "Palsa-739", "Palsa-739", "sp019236545" ], "_meo": [ { "id": "MEO_0000055", "label": "rhizosphere" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }