{ "type": "genome", "identifier": "GCA_019236735.1", "organism": "Burkholderiaceae bacterium", "title": "Burkholderiaceae bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "The Genomics for Climate Change Research Center (GCCRC)", "publication": [ {} ], "properties": { "assembly_accession": "GCA_019236735.1", "bioproject": "PRJNA687273", "biosample": "SAMN17140197", "wgs_master": "JAFAIM000000000.1", "refseq_category": "na", "taxid": "2030806", "species_taxid": "2030806", "organism_name": "Burkholderiaceae bacterium", "infraspecific_name": "", "isolate": "CP_BE_BS_47", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/07/15", "asm_name": "ASM1923673v1", "submitter": "The Genomics for Climate Change Research Center (GCCRC)", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/236/735/GCA_019236735.1_ASM1923673v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-07-15", "dateModified": "2021-07-15", "datePublished": "2021-07-15", "_annotation": { "sample_count": 1, "sample_organism": [ "Burkholderiaceae bacterium" ], "sample_taxid": [ "2030806" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Brazil: Minas Gerais" ], "sample_host_location_id": [], "data_size": "0.927 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 97.92, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "3320608", "Number of Sequences": "95", "Longest Sequences (bp)": "175232", "N50 (bp)": "59927", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "65.0", "Number of CDSs": "3066", "Average Protein Length": "320.3", "Coding Ratio (%)": "88.7", "Number of rRNAs": "0", "Number of tRNAs": "43", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Aromatoleum petrolei", "strain": "strain=ToN1", "accession": "GCA_017894385.1", "taxid": 76116, "species_taxid": 76116, "relation_to_type": "type", "validated": true, "ani": 76.7534, "matched_fragments": 104, "total_fragments": 1054, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aromatoleum petrolei", "strain": "strain=ToN1", "accession": "GCA_012910985.1", "taxid": 76116, "species_taxid": 76116, "relation_to_type": "type", "validated": true, "ani": 76.683, "matched_fragments": 105, "total_fragments": 1054, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aromatoleum toluvorans", "strain": "strain=Td21", "accession": "GCA_012910905.1", "taxid": 92002, "species_taxid": 92002, "relation_to_type": "type", "validated": true, "ani": 76.521, "matched_fragments": 122, "total_fragments": 1054, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ralstonia pseudosolanacearum", "strain": "strain=LMG 9673", "accession": "GCA_024925465.1", "taxid": 1310165, "species_taxid": 1310165, "relation_to_type": "type", "validated": true, "ani": 76.4683, "matched_fragments": 162, "total_fragments": 1054, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Massilia agilis", "strain": "strain=JCM 31605", "accession": "GCA_024756255.1", "taxid": 1811226, "species_taxid": 1811226, "relation_to_type": "type", "validated": true, "ani": 76.4656, "matched_fragments": 139, "total_fragments": 1054, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodocyclus purpureus", "strain": "strain=DSM 168", "accession": "GCA_016653115.1", "taxid": 1067, "species_taxid": 1067, "relation_to_type": "type", "validated": true, "ani": 76.4651, "matched_fragments": 126, "total_fragments": 1054, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ralstonia pseudosolanacearum", "strain": "strain=LMG 9673", "accession": "GCA_919586305.1", "taxid": 1310165, "species_taxid": 1310165, "relation_to_type": "type", "validated": true, "ani": 76.3938, "matched_fragments": 164, "total_fragments": 1054, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Massilia glaciei", "strain": "strain=B448-2", "accession": "GCA_003011895.2", "taxid": 1524097, "species_taxid": 1524097, "relation_to_type": "type", "validated": true, "ani": 76.337, "matched_fragments": 151, "total_fragments": 1054, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Massilia terrae", "strain": "strain=JCM 31606", "accession": "GCA_024753145.1", "taxid": 1811224, "species_taxid": 1811224, "relation_to_type": "type", "validated": true, "ani": 76.3162, "matched_fragments": 157, "total_fragments": 1054, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Derxia gummosa", "strain": "strain=DSM 723", "accession": "GCA_000482785.1", "taxid": 203699, "species_taxid": 203699, "relation_to_type": "type", "validated": true, "ani": 76.3041, "matched_fragments": 157, "total_fragments": 1054, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Massilia solisilvae", "strain": "strain=JCM 31607", "accession": "GCA_024753215.1", "taxid": 1811225, "species_taxid": 1811225, "relation_to_type": "type", "validated": true, "ani": 76.2705, "matched_fragments": 140, "total_fragments": 1054, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Burkholderia multivorans", "strain": "strain=ATCC BAA-247", "accession": "GCA_000959525.1", "taxid": 87883, "species_taxid": 87883, "relation_to_type": "type", "validated": true, "ani": 76.2565, "matched_fragments": 176, "total_fragments": 1054, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aromatoleum toluclasticum", "strain": "strain=MF63", "accession": "GCA_000378245.1", "taxid": 92003, "species_taxid": 92003, "relation_to_type": "type", "validated": true, "ani": 76.238, "matched_fragments": 129, "total_fragments": 1054, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Achromobacter xylosoxidans", "strain": "strain=PartM-Axylosoxidans-RM8376", "accession": "GCA_022870085.1", "taxid": 85698, "species_taxid": 85698, "relation_to_type": "type", "validated": true, "ani": 76.2164, "matched_fragments": 156, "total_fragments": 1054, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aromatoleum tolulyticum", "strain": "strain=ATCC 51758", "accession": "GCA_900156155.1", "taxid": 34027, "species_taxid": 34027, "relation_to_type": "type", "validated": true, "ani": 76.142, "matched_fragments": 130, "total_fragments": 1054, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodocyclus tenuis", "strain": "strain=2761", "accession": "GCA_014197755.1", "taxid": 1066, "species_taxid": 1066, "relation_to_type": "type", "validated": true, "ani": 76.108, "matched_fragments": 91, "total_fragments": 1054, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodocyclus tenuis", "strain": "strain=2761", "accession": "GCA_009469755.1", "taxid": 1066, "species_taxid": 1066, "relation_to_type": "type", "validated": true, "ani": 76.0927, "matched_fragments": 92, "total_fragments": 1054, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Massilia forsythiae", "strain": "strain=GN2-R2", "accession": "GCA_012849555.1", "taxid": 2728020, "species_taxid": 2728020, "relation_to_type": "type", "validated": true, "ani": 76.0371, "matched_fragments": 175, "total_fragments": 1054, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Burkholderia thailandensis", "strain": "strain=E264; ATCC 700388", "accession": "GCA_000012365.1", "taxid": 57975, "species_taxid": 57975, "relation_to_type": "type", "validated": true, "ani": 76.0326, "matched_fragments": 181, "total_fragments": 1054, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Burkholderia plantarii", "strain": "strain=ATCC 43733", "accession": "GCA_001411805.1", "taxid": 41899, "species_taxid": 41899, "relation_to_type": "type", "validated": true, "ani": 75.9858, "matched_fragments": 220, "total_fragments": 1054, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Burkholderia plantarii", "strain": "strain=LMG 9035", "accession": "GCA_902832905.1", "taxid": 41899, "species_taxid": 41899, "relation_to_type": "type", "validated": true, "ani": 75.9822, "matched_fragments": 214, "total_fragments": 1054, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cupriavidus numazuensis", "strain": "strain=LMG 26411", "accession": "GCA_905397435.1", "taxid": 221992, "species_taxid": 221992, "relation_to_type": "type", "validated": true, "ani": 75.9389, "matched_fragments": 168, "total_fragments": 1054, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Duganella aquatilis", "strain": "strain=FT26W", "accession": "GCA_009674565.1", "taxid": 2666082, "species_taxid": 2666082, "relation_to_type": "type", "validated": true, "ani": 75.9351, "matched_fragments": 136, "total_fragments": 1054, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Burkholderia mallei", "strain": "strain=ATCC 23344", "accession": "GCA_000011705.1", "taxid": 13373, "species_taxid": 13373, "relation_to_type": "type", "validated": true, "ani": 75.9229, "matched_fragments": 172, "total_fragments": 1054, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Duganella alba", "strain": "strain=FT9W", "accession": "GCA_009674495.1", "taxid": 2666081, "species_taxid": 2666081, "relation_to_type": "type", "validated": true, "ani": 75.9227, "matched_fragments": 150, "total_fragments": 1054, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Burkholderia mallei", "strain": "strain=NCTC12938", "accession": "GCA_900446245.1", "taxid": 13373, "species_taxid": 13373, "relation_to_type": "type", "validated": true, "ani": 75.916, "matched_fragments": 171, "total_fragments": 1054, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Caballeronia concitans", "strain": "", "accession": "GCA_001544615.2", "taxid": 1777133, "species_taxid": 1777133, "relation_to_type": "type", "validated": true, "ani": 75.8336, "matched_fragments": 100, "total_fragments": 1054, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Plasticicumulans lactativorans", "strain": "strain=DSM 25287", "accession": "GCA_004341245.1", "taxid": 1133106, "species_taxid": 1133106, "relation_to_type": "type", "validated": true, "ani": 75.7612, "matched_fragments": 133, "total_fragments": 1054, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 97.92, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_019236735.1", "gtdb_species": "s__VBCK01 sp019236735", "ani": 100.0, "matched_fragments": 1048, "total_fragments": 1054, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__VBCK01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCA_005882215.1", "gtdb_species": "s__VBCK01 sp005882215", "ani": 79.3443, "matched_fragments": 527, "total_fragments": 1054, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__VBCK01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_011056935.1", "gtdb_species": "s__DSNY01 sp011056935", "ani": 77.7114, "matched_fragments": 263, "total_fragments": 1054, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__DSNY01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.37", "min_intra_species_ani": "98.37", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.91", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_016716275.1", "gtdb_species": "s__JADJWR01 sp016716275", "ani": 77.6517, "matched_fragments": 264, "total_fragments": 1054, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__JADJWR01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_016861185.1", "gtdb_species": "s__DSNY01 sp016861185", "ani": 77.5411, "matched_fragments": 265, "total_fragments": 1054, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__DSNY01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_000828975.1", "gtdb_species": "s__GJ-E10 sp000828975", "ani": 77.3635, "matched_fragments": 172, "total_fragments": 1054, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__GJ-E10", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_008039575.1", "gtdb_species": "s__SCN-69-89 sp008039575", "ani": 77.3294, "matched_fragments": 157, "total_fragments": 1054, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__SCN-69-89", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_001724855.1", "gtdb_species": "s__SCN-69-89 sp001724855", "ani": 77.1441, "matched_fragments": 176, "total_fragments": 1054, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__SCN-69-89", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_013403875.1", "gtdb_species": "s__Burkholderia guangdongensis", "ani": 76.3552, "matched_fragments": 159, "total_fragments": 1054, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Burkholderia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_903831455.1", "gtdb_species": "s__CAIKXV01 sp903831455", "ani": 76.293, "matched_fragments": 92, "total_fragments": 1054, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__CAIKXV01;g__CAIKXV01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.62", "min_intra_species_ani": "99.56", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.90", "num_clustered_genomes": 5, "status": "-" }, { "accession": "GCA_017880775.1", "gtdb_species": "s__JADGRQ01 sp017880775", "ani": 76.022, "matched_fragments": 113, "total_fragments": 1054, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__SG8-39;g__JADGRQ01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_003153475.1", "gtdb_species": "s__PALSA-1003 sp003153475", "ani": 75.8944, "matched_fragments": 74, "total_fragments": 1054, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Casimicrobiaceae;g__PALSA-1003", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_013389055.1", "gtdb_species": "s__Sulfuritortus sp013389055", "ani": 75.7996, "matched_fragments": 53, "total_fragments": 1054, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Thiobacillaceae;g__Sulfuritortus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.267, "cell_length": 0.119, "doubling_h": -0.007, "growth_tmp": 30.563, "optimum_tmp": 30.641, "optimum_ph": 6.554, "genome_size": 6983573.911, "gc_content": 63.546, "coding_genes": 5983.195, "rRNA16S_genes": 4.699, "tRNA_genes": 62.266, "gram_stain": 0.0, "sporulation": 0.026, "motility": 0.693, "range_salinity": 0.222, "facultative_respiration": 0.072, "anaerobic_respiration": 0.032, "aerobic_respiration": 0.895, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 0.967, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.021, "vibrio_cell_shape": 0.01, "spiral_cell_shape": 0.0 }, "_gtdb_taxon": [ "d__Bacteria", "p__Pseudomonadota", "c__Gammaproteobacteria", "o__Burkholderiales", "f__Burkholderiaceae", "g__VBCK01", "s__VBCK01 sp019236735" ], "_genome_taxon": [ "Burkholderiaceae", "bacterium", "d__Bacteria", "p__Pseudomonadota", "c__Gammaproteobacteria", "o__Burkholderiales", "f__Burkholderiaceae", "g__VBCK01", "s__VBCK01 sp019236735", "Bacteria", "Pseudomonadota", "Gammaproteobacteria", "Burkholderiales", "Burkholderiaceae", "VBCK01", "VBCK01", "sp019236735" ], "_meo": [ { "id": "MEO_0000055", "label": "rhizosphere" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }