{ "type": "genome", "identifier": "GCA_019243075.1", "organism": "Bradyrhizobium sp.", "title": "Bradyrhizobium sp.", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "The Genomics for Climate Change Research Center (GCCRC)", "publication": [ {} ], "properties": { "assembly_accession": "GCA_019243075.1", "bioproject": "PRJNA687273", "biosample": "SAMN17140525", "wgs_master": "JAFAUV000000000.1", "refseq_category": "na", "taxid": "376", "species_taxid": "376", "organism_name": "Bradyrhizobium sp.", "infraspecific_name": "", "isolate": "CP_BM_RX_19", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/07/15", "asm_name": "ASM1924307v1", "submitter": "The Genomics for Climate Change Research Center (GCCRC)", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/243/075/GCA_019243075.1_ASM1924307v1", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-07-15", "dateModified": "2021-07-15", "datePublished": "2021-07-15", "_annotation": { "sample_count": 1, "sample_organism": [ "Bradyrhizobium sp." ], "sample_taxid": [ "376" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Brazil: Minas Gerais" ], "sample_host_location_id": [], "data_size": "1.055 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 27.31, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "3794688", "Number of Sequences": "459", "Longest Sequences (bp)": "49329", "N50 (bp)": "10748", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "64.4", "Number of CDSs": "3180", "Average Protein Length": "298.1", "Coding Ratio (%)": "74.9", "Number of rRNAs": "0", "Number of tRNAs": "20", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Bradyrhizobium mercantei", "strain": "strain=SEMIA 6399", "accession": "GCA_001982635.1", "taxid": 1904807, "species_taxid": 1904807, "relation_to_type": "type", "validated": true, "ani": 81.8106, "matched_fragments": 702, "total_fragments": 1013, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium tropiciagri", "strain": "strain=SEMIA 6148", "accession": "GCA_001189845.1", "taxid": 312253, "species_taxid": 312253, "relation_to_type": "type", "validated": true, "ani": 81.5754, "matched_fragments": 728, "total_fragments": 1013, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium acaciae", "strain": "strain=10BB", "accession": "GCA_020889785.1", "taxid": 2683706, "species_taxid": 2683706, "relation_to_type": "type", "validated": true, "ani": 81.499, "matched_fragments": 679, "total_fragments": 1013, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium forestalis", "strain": "strain=INPA54B", "accession": "GCA_002795245.1", "taxid": 1419263, "species_taxid": 1419263, "relation_to_type": "type", "validated": true, "ani": 81.4942, "matched_fragments": 665, "total_fragments": 1013, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium viridifuturi", "strain": "strain=SEMIA 690", "accession": "GCA_001238275.1", "taxid": 1654716, "species_taxid": 1654716, "relation_to_type": "type", "validated": true, "ani": 81.4942, "matched_fragments": 714, "total_fragments": 1013, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium macuxiense", "strain": "strain=BR 10303", "accession": "GCA_001542415.1", "taxid": 1755647, "species_taxid": 1755647, "relation_to_type": "type", "validated": true, "ani": 81.4657, "matched_fragments": 699, "total_fragments": 1013, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium vignae", "strain": "strain=LMG 28791", "accession": "GCA_004114425.1", "taxid": 1549949, "species_taxid": 1549949, "relation_to_type": "type", "validated": true, "ani": 81.3961, "matched_fragments": 649, "total_fragments": 1013, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium sediminis", "strain": "strain=S2-20-1", "accession": "GCA_018736085.1", "taxid": 2840469, "species_taxid": 2840469, "relation_to_type": "type", "validated": true, "ani": 81.385, "matched_fragments": 588, "total_fragments": 1013, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium amphicarpaeae", "strain": "strain=39S1MB", "accession": "GCA_002266435.2", "taxid": 1404768, "species_taxid": 1404768, "relation_to_type": "type", "validated": true, "ani": 81.3819, "matched_fragments": 673, "total_fragments": 1013, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium zhanjiangense", "strain": "strain=CCBAU 51778", "accession": "GCA_004114935.1", "taxid": 1325107, "species_taxid": 1325107, "relation_to_type": "type", "validated": true, "ani": 81.3452, "matched_fragments": 669, "total_fragments": 1013, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium nitroreducens", "strain": "strain=TSA1", "accession": "GCA_002776695.1", "taxid": 709803, "species_taxid": 709803, "relation_to_type": "type", "validated": true, "ani": 81.2962, "matched_fragments": 697, "total_fragments": 1013, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium ottawaense", "strain": "strain=OO99", "accession": "GCA_002278135.2", "taxid": 931866, "species_taxid": 931866, "relation_to_type": "type", "validated": true, "ani": 81.1679, "matched_fragments": 683, "total_fragments": 1013, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium cenepequi", "strain": "strain=CNPSo 4026", "accession": "GCA_020329485.1", "taxid": 2821403, "species_taxid": 2821403, "relation_to_type": "type", "validated": true, "ani": 80.8908, "matched_fragments": 666, "total_fragments": 1013, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium aeschynomenes", "strain": "strain=83002", "accession": "GCA_013178945.1", "taxid": 2734909, "species_taxid": 2734909, "relation_to_type": "type", "validated": true, "ani": 80.5688, "matched_fragments": 624, "total_fragments": 1013, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 27.31, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_019243075.1", "gtdb_species": "s__Bradyrhizobium sp019243075", "ani": 100.0, "matched_fragments": 996, 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