{
    "type": "genome",
    "identifier": "GCA_019309385.1",
    "organism": "Deltaproteobacteria bacterium",
    "title": "Deltaproteobacteria bacterium",
    "description": "derived from metagenome; genus undefined",
    "data type": "Genome sequencing and assembly",
    "organization": "The University of Texas at Austin",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_019309385.1",
        "bioproject": "PRJNA688516",
        "biosample": "SAMN17179358",
        "wgs_master": "JAFDGH000000000.1",
        "refseq_category": "na",
        "taxid": "2026735",
        "species_taxid": "2026735",
        "organism_name": "Deltaproteobacteria bacterium",
        "infraspecific_name": "",
        "isolate": "Meg22_1012_Bin_237",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2021/07/21",
        "asm_name": "ASM1930938v1",
        "submitter": "The University of Texas at Austin",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/309/385/GCA_019309385.1_ASM1930938v1",
        "excluded_from_refseq": "derived from metagenome; genus undefined",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2021-07-21",
    "dateModified": "2021-07-21",
    "datePublished": "2021-07-21",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Deltaproteobacteria bacterium"
        ],
        "sample_taxid": [
            "2026735"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "USA: Guaymas Basin, Gulf of California"
        ],
        "sample_host_location_id": [],
        "data_size": "1.094 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "3827001",
        "Number of Sequences": "303",
        "Longest Sequences (bp)": "64609",
        "N50 (bp)": "19552",
        "Gap Ratio (%)": "0.005644",
        "GCcontent (%)": "54.2",
        "Number of CDSs": "3398",
        "Average Protein Length": "305.7",
        "Coding Ratio (%)": "81.4",
        "Number of rRNAs": "0",
        "Number of tRNAs": "46",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Desulfatiglans anilini",
                "strain": "strain=DSM 4660",
                "accession": "GCA_000422285.1",
                "taxid": 90728,
                "species_taxid": 90728,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.9171,
                "matched_fragments": 51,
                "total_fragments": 1120,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_011051075.1",
                "gtdb_species": "s__Desulfacyla sp011051075",
                "ani": 99.1882,
                "matched_fragments": 691,
                "total_fragments": 1120,
                "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__DSM-4660;o__Desulfatiglandales;f__Desulfatiglandaceae;g__Desulfacyla",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCA_014382715.1",
                "gtdb_species": "s__Desulfacyla euxinica",
                "ani": 77.7446,
                "matched_fragments": 263,
                "total_fragments": 1120,
                "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__DSM-4660;o__Desulfatiglandales;f__Desulfatiglandaceae;g__Desulfacyla",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.00",
                "min_intra_species_ani": "98.56",
                "mean_intra_species_af": "0.73",
                "min_intra_species_af": "0.65",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_016783065.1",
                "gtdb_species": "s__JABMQV01 sp016783065",
                "ani": 77.3624,
                "matched_fragments": 81,
                "total_fragments": 1120,
                "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__DSM-4660;o__Desulfatiglandales;f__Desulfatiglandaceae;g__JABMQV01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_014382905.1",
                "gtdb_species": "s__Desulfacyla sp014382905",
                "ani": 77.2522,
                "matched_fragments": 203,
                "total_fragments": 1120,
                "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__DSM-4660;o__Desulfatiglandales;f__Desulfatiglandaceae;g__Desulfacyla",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.82",
                "min_intra_species_ani": "98.20",
                "mean_intra_species_af": "0.84",
                "min_intra_species_af": "0.79",
                "num_clustered_genomes": 5,
                "status": "-"
            },
            {
                "accession": "GCA_016844935.1",
                "gtdb_species": "s__NaphS2 sp016844935",
                "ani": 76.6201,
                "matched_fragments": 98,
                "total_fragments": 1120,
                "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__DSM-4660;o__Desulfatiglandales;f__Desulfatiglandaceae;g__NaphS2",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_013349725.1",
                "gtdb_species": "s__DUZB01 sp013349725",
                "ani": 76.503,
                "matched_fragments": 57,
                "total_fragments": 1120,
                "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__DSM-4660;o__Desulfatiglandales;f__Desulfatiglandaceae;g__DUZB01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_000179315.1",
                "gtdb_species": "s__NaphS2 sp000179315",
                "ani": 76.0006,
                "matched_fragments": 78,
                "total_fragments": 1120,
                "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__DSM-4660;o__Desulfatiglandales;f__Desulfatiglandaceae;g__NaphS2",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000422285.1",
                "gtdb_species": "s__Desulfatiglans anilini",
                "ani": 75.9171,
                "matched_fragments": 51,
                "total_fragments": 1120,
                "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__DSM-4660;o__Desulfatiglandales;f__Desulfatiglandaceae;g__Desulfatiglans",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Desulfobacterota",
        "c__DSM-4660",
        "o__Desulfatiglandales",
        "f__Desulfatiglandaceae",
        "g__Desulfacyla",
        "s__Desulfacyla sp011051075"
    ],
    "_genome_taxon": [
        "Deltaproteobacteria",
        "bacterium",
        "d__Bacteria",
        "p__Desulfobacterota",
        "c__DSM-4660",
        "o__Desulfatiglandales",
        "f__Desulfatiglandaceae",
        "g__Desulfacyla",
        "s__Desulfacyla sp011051075",
        "Bacteria",
        "Desulfobacterota",
        "DSM-4660",
        "Desulfatiglandales",
        "Desulfatiglandaceae",
        "Desulfacyla",
        "Desulfacyla",
        "sp011051075"
    ],
    "_meo": [
        {
            "id": "MEO_0000031",
            "label": "hydrothermal vent"
        },
        {
            "id": "MEO_0000066",
            "label": "sediment"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}