{ "type": "genome", "identifier": "GCA_019310365.1", "organism": "Deltaproteobacteria bacterium", "title": "Deltaproteobacteria bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "The University of Texas at Austin", "publication": [ {} ], "properties": { "assembly_accession": "GCA_019310365.1", "bioproject": "PRJNA688516", "biosample": "SAMN17179308", "wgs_master": "JAFDEJ000000000.1", "refseq_category": "na", "taxid": "2026735", "species_taxid": "2026735", "organism_name": "Deltaproteobacteria bacterium", "infraspecific_name": "", "isolate": "Meg19_46_Bin_131", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/07/21", "asm_name": "ASM1931036v1", "submitter": "The University of Texas at Austin", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/310/365/GCA_019310365.1_ASM1931036v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-07-21", "dateModified": "2021-07-21", "datePublished": "2021-07-21", "_annotation": { "sample_count": 1, "sample_organism": [ "Deltaproteobacteria bacterium" ], "sample_taxid": [ "2026735" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA: Guaymas Basin, Gulf of California" ], "sample_host_location_id": [], "data_size": "1.074 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 83.33, "contamination": 4.55, "strain_heterogeneity": 50.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "3970655", "Number of Sequences": "294", "Longest Sequences (bp)": "74212", "N50 (bp)": "20538", "Gap Ratio (%)": "0.000327", "GCcontent (%)": "70.4", "Number of CDSs": "3502", "Average Protein Length": "323.1", "Coding Ratio (%)": "85.5", "Number of rRNAs": "1", "Number of tRNAs": "40", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Thioflavicoccus mobilis", "strain": "strain=8321", "accession": "GCA_000327045.1", "taxid": 80679, "species_taxid": 80679, "relation_to_type": "type", "validated": true, "ani": 75.2332, "matched_fragments": 61, "total_fragments": 1170, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Myxococcus llanfairpwllgwyngyllgogerychwyrndrobwllllantysiliogogogochensis", "strain": "strain=AM401", "accession": "GCA_006636215.1", "taxid": 2590453, "species_taxid": 2590453, "relation_to_type": "type", "validated": true, "ani": 75.1721, "matched_fragments": 120, "total_fragments": 1170, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoxanthomonas jiangsuensis", "strain": "strain=DSM 22398", "accession": "GCA_010093185.1", "taxid": 619688, "species_taxid": 619688, "relation_to_type": "type", "validated": true, "ani": 75.0972, "matched_fragments": 89, "total_fragments": 1170, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sulfuritortus calidifontis", "strain": "strain=J1A", "accession": "GCA_003967275.1", "taxid": 1914471, "species_taxid": 1914471, "relation_to_type": "type", "validated": true, "ani": 75.0878, "matched_fragments": 59, "total_fragments": 1170, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sulfuritortus calidifontis", "strain": "strain=DSM 103923", "accession": "GCA_004346085.1", "taxid": 1914471, "species_taxid": 1914471, "relation_to_type": "type", "validated": true, "ani": 75.0796, "matched_fragments": 60, "total_fragments": 1170, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Stigmatella hybrida", "strain": "strain=DSM 14722", "accession": "GCA_020103775.1", "taxid": 394097, "species_taxid": 394097, "relation_to_type": "type", "validated": true, "ani": 75.0497, "matched_fragments": 114, "total_fragments": 1170, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arenimonas composti", "strain": "strain=DSM 18010", "accession": "GCA_000426365.1", "taxid": 370776, "species_taxid": 370776, "relation_to_type": "type", "validated": true, "ani": 75.0149, "matched_fragments": 121, "total_fragments": 1170, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arenimonas composti", "strain": "strain=TR7-09", "accession": "GCA_000747175.1", "taxid": 370776, "species_taxid": 370776, "relation_to_type": "type", "validated": true, "ani": 75.0115, "matched_fragments": 122, "total_fragments": 1170, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Stigmatella aurantiaca", "strain": "strain=DSM 17044", "accession": "GCA_900109545.1", "taxid": 41, "species_taxid": 41, "relation_to_type": "type", "validated": true, "ani": 75.008, "matched_fragments": 122, "total_fragments": 1170, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aeromicrobium chenweiae", "strain": "strain=592", "accession": "GCA_003065605.1", "taxid": 2079793, "species_taxid": 2079793, "relation_to_type": "type", "validated": true, "ani": 74.9993, "matched_fragments": 100, "total_fragments": 1170, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Massilia soli", "strain": "strain=R798", "accession": "GCA_016809835.2", "taxid": 2792854, "species_taxid": 2792854, "relation_to_type": "type", "validated": true, "ani": 74.9752, "matched_fragments": 56, "total_fragments": 1170, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Salipiger profundus", "strain": "strain=CGMCC 1.12377", "accession": "GCA_014637265.1", "taxid": 1229727, "species_taxid": 1229727, "relation_to_type": "type", "validated": true, "ani": 74.974, "matched_fragments": 84, "total_fragments": 1170, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aeromicrobium yanjiei", "strain": "strain=MF47", "accession": "GCA_009649075.1", "taxid": 2662028, "species_taxid": 2662028, "relation_to_type": "type", "validated": true, "ani": 74.9411, "matched_fragments": 93, "total_fragments": 1170, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium nodulans", "strain": "strain=ORS 2060", "accession": "GCA_000022085.1", "taxid": 114616, "species_taxid": 114616, "relation_to_type": "type", "validated": true, "ani": 74.9393, "matched_fragments": 138, "total_fragments": 1170, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corallococcus silvisoli", "strain": "strain=c25j21", "accession": "GCA_009909145.1", "taxid": 2697031, "species_taxid": 2697031, "relation_to_type": "type", "validated": true, "ani": 74.9242, "matched_fragments": 138, "total_fragments": 1170, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraconexibacter algicola", "strain": "strain=Seoho-28", "accession": "GCA_003044185.1", "taxid": 2133960, "species_taxid": 2133960, "relation_to_type": "type", "validated": true, "ani": 74.8931, "matched_fragments": 188, "total_fragments": 1170, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Luteimonas salinisoli", "strain": "strain=SJ-92", "accession": "GCA_013425525.1", "taxid": 2752307, "species_taxid": 2752307, "relation_to_type": "type", "validated": true, "ani": 74.885, "matched_fragments": 121, "total_fragments": 1170, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Stigmatella erecta", "strain": "strain=DSM 16858", "accession": "GCA_900111745.1", "taxid": 83460, "species_taxid": 83460, "relation_to_type": "type", "validated": true, "ani": 74.8655, "matched_fragments": 130, "total_fragments": 1170, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Solirubrobacter pauli", "strain": "strain=DSM 14954", "accession": "GCA_003633755.1", "taxid": 166793, "species_taxid": 166793, "relation_to_type": "type", "validated": true, "ani": 74.8455, "matched_fragments": 233, "total_fragments": 1170, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Burkholderia multivorans", "strain": "strain=ATCC BAA-247", "accession": "GCA_000959525.1", "taxid": 87883, "species_taxid": 87883, "relation_to_type": "type", "validated": true, "ani": 74.8038, "matched_fragments": 159, "total_fragments": 1170, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microlunatus speluncae", "strain": "strain=SYSU K12189", "accession": "GCA_009299835.1", "taxid": 2594267, "species_taxid": 2594267, "relation_to_type": "type", "validated": true, "ani": 74.7966, "matched_fragments": 111, "total_fragments": 1170, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Asanoa ishikariensis", "strain": "strain=DSM 44718", "accession": "GCA_900107455.1", "taxid": 137265, "species_taxid": 137265, "relation_to_type": "type", "validated": true, "ani": 74.7468, "matched_fragments": 172, "total_fragments": 1170, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halorubrum halophilum", "strain": "strain=B8", "accession": "GCA_000739595.1", "taxid": 413816, "species_taxid": 413816, "relation_to_type": "type", "validated": true, "ani": 74.6374, "matched_fragments": 68, "total_fragments": 1170, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halorubrum coriense", "strain": "strain=DSM 10284", "accession": "GCA_000337035.1", "taxid": 64713, "species_taxid": 64713, "relation_to_type": "type", "validated": true, "ani": 74.6323, "matched_fragments": 81, "total_fragments": 1170, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 83.33, "contamination": 4.55, "strain_heterogeneity": 50.0 }, "gtdb_result": [ { "accession": "GCA_016875225.1", "gtdb_species": "s__VGRW01 sp016875225", "ani": 77.3565, "matched_fragments": 343, "total_fragments": 1170, "gtdb_taxonomy": "d__Bacteria;p__Myxococcota_A;c__UBA9160;o__SZUA-336;f__SZUA-336;g__VGRW01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_004356455.1", "gtdb_species": "s__SMWZ01 sp004356455", "ani": 76.3437, "matched_fragments": 164, "total_fragments": 1170, "gtdb_taxonomy": "d__Bacteria;p__Myxococcota_A;c__UBA9160;o__SZUA-336;f__SZUA-336;g__SMWZ01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.36", "min_intra_species_ani": "99.36", "mean_intra_species_af": "0.81", 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