{ "type": "genome", "identifier": "GCA_019310525.1", "organism": "Deltaproteobacteria bacterium", "title": "Deltaproteobacteria bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "The University of Texas at Austin", "publication": [ {} ], "properties": { "assembly_accession": "GCA_019310525.1", "bioproject": "PRJNA688516", "biosample": "SAMN17179303", "wgs_master": "JAFDEE000000000.1", "refseq_category": "na", "taxid": "2026735", "species_taxid": "2026735", "organism_name": "Deltaproteobacteria bacterium", "infraspecific_name": "", "isolate": "Meg19_1012_Bin_445", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/07/21", "asm_name": "ASM1931052v1", "submitter": "The University of Texas at Austin", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/310/525/GCA_019310525.1_ASM1931052v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-07-21", "dateModified": "2021-07-21", "datePublished": "2021-07-21", "_annotation": { "sample_count": 1, "sample_organism": [ "Deltaproteobacteria bacterium" ], "sample_taxid": [ "2026735" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA: Guaymas Basin, Gulf of California" ], "sample_host_location_id": [], "data_size": "1.081 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "3780291", "Number of Sequences": "158", "Longest Sequences (bp)": "139031", "N50 (bp)": "41045", "Gap Ratio (%)": "0.002169", "GCcontent (%)": "54.1", "Number of CDSs": "3251", "Average Protein Length": "322.4", "Coding Ratio (%)": "83.2", "Number of rRNAs": "1", "Number of tRNAs": "44", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Desulfatiglans anilini", "strain": "strain=DSM 4660", "accession": "GCA_000422285.1", "taxid": 90728, "species_taxid": 90728, "relation_to_type": "type", "validated": true, "ani": 76.805, "matched_fragments": 54, "total_fragments": 1182, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000422285.1", "gtdb_species": "s__Desulfatiglans anilini", "ani": 76.8507, "matched_fragments": 53, "total_fragments": 1182, 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"d__Bacteria;p__Desulfobacterota;c__DSM-4660;o__Desulfatiglandales;f__Desulfatiglandaceae;g__NaphS2", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": null, "doubling_h": null, "growth_tmp": null, "optimum_tmp": null, "optimum_ph": null, "genome_size": null, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": null, "sporulation": null, "motility": null, "range_salinity": null, "facultative_respiration": null, "anaerobic_respiration": null, "aerobic_respiration": null, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": null, "coccus_cell_shape": null, "filament_cell_shape": null, "coccobacillus_cell_shape": null, "vibrio_cell_shape": null, "spiral_cell_shape": null }, "_gtdb_taxon": [ "d__Bacteria", "p__Desulfobacterota", "c__DSM-4660", "o__Desulfatiglandales", "f__HGW-15", "g__JAFDEE01", "s__JAFDEE01 sp019310525" ], "_genome_taxon": [ "Deltaproteobacteria", "bacterium", "d__Bacteria", "p__Desulfobacterota", "c__DSM-4660", "o__Desulfatiglandales", "f__HGW-15", "g__JAFDEE01", "s__JAFDEE01 sp019310525", "Bacteria", "Desulfobacterota", "DSM-4660", "Desulfatiglandales", "HGW-15", "JAFDEE01", "JAFDEE01", "sp019310525" ], "_meo": [ { "id": "MEO_0000031", "label": "hydrothermal vent" }, { "id": "MEO_0000066", "label": "sediment" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }