{
    "type": "genome",
    "identifier": "GCA_019310845.1",
    "organism": "Deltaproteobacteria bacterium",
    "title": "Deltaproteobacteria bacterium",
    "description": "derived from metagenome; fragmented assembly; genus undefined",
    "data type": "Genome sequencing and assembly",
    "organization": "The University of Texas at Austin",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_019310845.1",
        "bioproject": "PRJNA688516",
        "biosample": "SAMN17179286",
        "wgs_master": "JAFDDN000000000.1",
        "refseq_category": "na",
        "taxid": "2026735",
        "species_taxid": "2026735",
        "organism_name": "Deltaproteobacteria bacterium",
        "infraspecific_name": "",
        "isolate": "Meg19_1012_Bin_142",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2021/07/21",
        "asm_name": "ASM1931084v1",
        "submitter": "The University of Texas at Austin",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/310/845/GCA_019310845.1_ASM1931084v1",
        "excluded_from_refseq": "derived from metagenome; fragmented assembly; genus undefined",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2021-07-21",
    "dateModified": "2021-07-21",
    "datePublished": "2021-07-21",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Deltaproteobacteria bacterium"
        ],
        "sample_taxid": [
            "2026735"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "USA: Guaymas Basin, Gulf of California"
        ],
        "sample_host_location_id": [],
        "data_size": "0.535 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 61.46,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "1900772",
        "Number of Sequences": "409",
        "Longest Sequences (bp)": "13214",
        "N50 (bp)": "5007",
        "Gap Ratio (%)": "0.008628",
        "GCcontent (%)": "63.8",
        "Number of CDSs": "1442",
        "Average Protein Length": "285.3",
        "Coding Ratio (%)": "64.9",
        "Number of rRNAs": "0",
        "Number of tRNAs": "28",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Desulfosarcina widdelii",
                "strain": "strain=PP31",
                "accession": "GCA_009688965.1",
                "taxid": 947919,
                "species_taxid": 947919,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.4303,
                "matched_fragments": 87,
                "total_fragments": 435,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Desulfosarcina ovata subsp. sediminis",
                "strain": "strain=28bB2T",
                "accession": "GCA_009688985.1",
                "taxid": 885957,
                "species_taxid": 83564,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.3504,
                "matched_fragments": 71,
                "total_fragments": 435,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Desulfosarcina ovata subsp. ovata",
                "strain": "strain=oXyS1",
                "accession": "GCA_009689005.1",
                "taxid": 2752305,
                "species_taxid": 83564,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.2972,
                "matched_fragments": 69,
                "total_fragments": 435,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 61.46,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_011042305.1",
                "gtdb_species": "s__UBA2174 sp011042305",
                "ani": 99.1653,
                "matched_fragments": 390,
                "total_fragments": 435,
                "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Desulfobacteria;o__Desulfobacterales;f__UBA2174;g__UBA2174",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCA_002327445.1",
                "gtdb_species": "s__UBA2174 sp002327445",
                "ani": 84.3217,
                "matched_fragments": 366,
                "total_fragments": 435,
                "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Desulfobacteria;o__Desulfobacterales;f__UBA2174;g__UBA2174",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.95",
                "min_intra_species_ani": "99.95",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.95",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_002432195.1",
                "gtdb_species": "s__UBA5852 sp002432195",
                "ani": 77.7206,
                "matched_fragments": 118,
                "total_fragments": 435,
                "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Desulfobacteria;o__Desulfobacterales;f__UBA5852;g__UBA5852",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_011390035.1",
                "gtdb_species": "s__JAABTE01 sp011390035",
                "ani": 77.7029,
                "matched_fragments": 58,
                "total_fragments": 435,
                "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Desulfobacteria;o__Desulfobacterales;f__Desulfococcaceae;g__JAABTE01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_016218685.1",
                "gtdb_species": "s__Desulfatitalea sp016218685",
                "ani": 77.5214,
                "matched_fragments": 67,
                "total_fragments": 435,
                "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Desulfobacteria;o__Desulfobacterales;f__Desulfosarcinaceae;g__Desulfatitalea",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_011389855.1",
                "gtdb_species": "s__JAABTD01 sp011389855",
                "ani": 77.4376,
                "matched_fragments": 92,
                "total_fragments": 435,
                "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Desulfobacteria;o__Desulfobacterales;f__Desulfococcaceae;g__JAABTD01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_009688965.1",
                "gtdb_species": "s__Desulfosarcina widdelii",
                "ani": 77.4303,
                "matched_fragments": 87,
                "total_fragments": 435,
                "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Desulfobacteria;o__Desulfobacterales;f__Desulfosarcinaceae;g__Desulfosarcina",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Desulfobacterota",
        "c__Desulfobacteria",
        "o__Desulfobacterales",
        "f__UBA2174",
        "g__UBA2174",
        "s__UBA2174 sp011042305"
    ],
    "_genome_taxon": [
        "Deltaproteobacteria",
        "bacterium",
        "d__Bacteria",
        "p__Desulfobacterota",
        "c__Desulfobacteria",
        "o__Desulfobacterales",
        "f__UBA2174",
        "g__UBA2174",
        "s__UBA2174 sp011042305",
        "Bacteria",
        "Desulfobacterota",
        "Desulfobacteria",
        "Desulfobacterales",
        "UBA2174",
        "UBA2174",
        "UBA2174",
        "sp011042305"
    ],
    "_meo": [
        {
            "id": "MEO_0000031",
            "label": "hydrothermal vent"
        },
        {
            "id": "MEO_0000066",
            "label": "sediment"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}