{
    "type": "genome",
    "identifier": "GCA_019310945.1",
    "organism": "Deltaproteobacteria bacterium",
    "title": "Deltaproteobacteria bacterium",
    "description": "derived from metagenome; genus undefined",
    "data type": "Genome sequencing and assembly",
    "organization": "The University of Texas at Austin",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_019310945.1",
        "bioproject": "PRJNA688516",
        "biosample": "SAMN17179281",
        "wgs_master": "JAFDDI000000000.1",
        "refseq_category": "na",
        "taxid": "2026735",
        "species_taxid": "2026735",
        "organism_name": "Deltaproteobacteria bacterium",
        "infraspecific_name": "",
        "isolate": "Meg19_02_Bin_81",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2021/07/21",
        "asm_name": "ASM1931094v1",
        "submitter": "The University of Texas at Austin",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/310/945/GCA_019310945.1_ASM1931094v1",
        "excluded_from_refseq": "derived from metagenome; genus undefined",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2021-07-21",
    "dateModified": "2021-07-21",
    "datePublished": "2021-07-21",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Deltaproteobacteria bacterium"
        ],
        "sample_taxid": [
            "2026735"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "USA: Guaymas Basin, Gulf of California"
        ],
        "sample_host_location_id": [],
        "data_size": "0.929 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 74.62,
        "contamination": 8.33,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "3404635",
        "Number of Sequences": "682",
        "Longest Sequences (bp)": "24380",
        "N50 (bp)": "5792",
        "Gap Ratio (%)": "0.001263",
        "GCcontent (%)": "70.6",
        "Number of CDSs": "2612",
        "Average Protein Length": "310.5",
        "Coding Ratio (%)": "71.5",
        "Number of rRNAs": "0",
        "Number of tRNAs": "25",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Inmirania thermothiophila",
                "strain": "strain=DSM 100275",
                "accession": "GCA_003751635.1",
                "taxid": 1750597,
                "species_taxid": 1750597,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.3815,
                "matched_fragments": 94,
                "total_fragments": 774,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Deferrisoma camini",
                "strain": "strain=S3R1",
                "accession": "GCA_000526155.1",
                "taxid": 1035120,
                "species_taxid": 1035120,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.3357,
                "matched_fragments": 56,
                "total_fragments": 774,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Myxococcus xanthus",
                "strain": "strain=DSM 16526",
                "accession": "GCA_900106535.1",
                "taxid": 34,
                "species_taxid": 34,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.1057,
                "matched_fragments": 83,
                "total_fragments": 774,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Myxococcus virescens",
                "strain": "strain=NBRC 100334",
                "accession": "GCA_007989405.1",
                "taxid": 83456,
                "species_taxid": 83456,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.1004,
                "matched_fragments": 89,
                "total_fragments": 774,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Myxococcus virescens",
                "strain": "strain=DSM 2260",
                "accession": "GCA_900101905.1",
                "taxid": 83456,
                "species_taxid": 83456,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.0933,
                "matched_fragments": 90,
                "total_fragments": 774,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Xanthobacter oligotrophicus",
                "strain": "strain=29k",
                "accession": "GCA_008364685.1",
                "taxid": 2607286,
                "species_taxid": 2607286,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.0634,
                "matched_fragments": 66,
                "total_fragments": 774,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Myxococcus fulvus",
                "strain": "strain=DSM 16525",
                "accession": "GCA_900111765.1",
                "taxid": 33,
                "species_taxid": 33,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.9928,
                "matched_fragments": 136,
                "total_fragments": 774,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Myxococcus vastator",
                "strain": "strain=AM301",
                "accession": "GCA_010894475.1",
                "taxid": 2709664,
                "species_taxid": 2709664,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.9722,
                "matched_fragments": 98,
                "total_fragments": 774,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Phycicoccus duodecadis",
                "strain": "strain=DSM 12806",
                "accession": "GCA_002846495.1",
                "taxid": 173053,
                "species_taxid": 173053,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.94,
                "matched_fragments": 54,
                "total_fragments": 774,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Xanthobacter autotrophicus",
                "strain": "strain=DSM 432",
                "accession": "GCA_005871085.1",
                "taxid": 280,
                "species_taxid": 280,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.9109,
                "matched_fragments": 54,
                "total_fragments": 774,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Methylobrevis albus",
                "strain": "strain=L22",
                "accession": "GCA_015904235.1",
                "taxid": 2793297,
                "species_taxid": 2793297,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.9011,
                "matched_fragments": 66,
                "total_fragments": 774,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Saccharothrix coeruleofusca",
                "strain": "strain=DSM 43679",
                "accession": "GCA_017876325.1",
                "taxid": 33919,
                "species_taxid": 33919,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.874,
                "matched_fragments": 126,
                "total_fragments": 774,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Saccharothrix coeruleofusca",
                "strain": "strain=JCM 3313",
                "accession": "GCA_014648515.1",
                "taxid": 33919,
                "species_taxid": 33919,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.8528,
                "matched_fragments": 134,
                "total_fragments": 774,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Modestobacter caceresii",
                "strain": "strain=KNN 45-2b",
                "accession": "GCA_000761485.1",
                "taxid": 1522368,
                "species_taxid": 1522368,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.8181,
                "matched_fragments": 77,
                "total_fragments": 774,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudonocardia autotrophica",
                "strain": "strain=NBRC 12743",
                "accession": "GCA_003945385.1",
                "taxid": 2074,
                "species_taxid": 2074,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 74.681,
                "matched_fragments": 98,
                "total_fragments": 774,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudonocardia autotrophica",
                "strain": "strain=DSM 535",
                "accession": "GCA_002119215.1",
                "taxid": 2074,
                "species_taxid": 2074,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 74.6764,
                "matched_fragments": 99,
                "total_fragments": 774,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Fodinicola acaciae",
                "strain": "strain=GKU 173",
                "accession": "GCA_010993745.1",
                "taxid": 2681555,
                "species_taxid": 2681555,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.6677,
                "matched_fragments": 76,
                "total_fragments": 774,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 74.62,
            "contamination": 8.33,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_002687015.1",
                "gtdb_species": "s__GCA-2687015 sp002687015",
                "ani": 76.9874,
                "matched_fragments": 192,
                "total_fragments": 774,
                "gtdb_taxonomy": "d__Bacteria;p__Myxococcota_A;c__UBA9160;o__UBA9160;f__UBA6930;g__GCA-2687015",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_003576805.1",
                "gtdb_species": "s__PR03 sp003576805",
                "ani": 76.9053,
                "matched_fragments": 225,
                "total_fragments": 774,
                "gtdb_taxonomy": "d__Bacteria;p__Myxococcota_A;c__UBA9160;o__UBA9160;f__PR03;g__PR03",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_013215615.1",
                "gtdb_species": "s__JABSQX01 sp013215615",
                "ani": 76.8261,
                "matched_fragments": 129,
                "total_fragments": 774,
                "gtdb_taxonomy": "d__Bacteria;p__Myxococcota_A;c__UBA9160;o__UBA9160;f__SMWR01;g__JABSQX01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_016875395.1",
                "gtdb_species": "s__VGRF01 sp016875395",
                "ani": 76.5247,
                "matched_fragments": 140,
                "total_fragments": 774,
                "gtdb_taxonomy": "d__Bacteria;p__Myxococcota_A;c__UBA9160;o__UBA9160;f__UBA6930;g__VGRF01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_900696485.1",
                "gtdb_species": "s__CAADGG01 sp900696485",
                "ani": 76.4973,
                "matched_fragments": 149,
                "total_fragments": 774,
                "gtdb_taxonomy": "d__Bacteria;p__Myxococcota_A;c__UBA9160;o__UBA9160;f__PR03;g__CAADGG01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.84",
                "min_intra_species_ani": "99.84",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.91",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_002729515.1",
                "gtdb_species": "s__GCA-2729515 sp002729515",
                "ani": 76.4929,
                "matched_fragments": 111,
                "total_fragments": 774,
                "gtdb_taxonomy": "d__Bacteria;p__Myxococcota_A;c__UBA9160;o__UBA9160;f__SMWR01;g__GCA-2729515",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_905339255.1",
                "gtdb_species": "s__MYXO sp905339255",
                "ani": 76.4322,
                "matched_fragments": 105,
                "total_fragments": 774,
                "gtdb_taxonomy": "d__Bacteria;p__Myxococcota_A;c__UBA9160;o__UBA9160;f__UBA9160;g__MYXO",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_011055735.1",
                "gtdb_species": "s__DSOP01 sp011055735",
                "ani": 76.4319,
                "matched_fragments": 204,
                "total_fragments": 774,
                "gtdb_taxonomy": "d__Bacteria;p__Myxococcota_A;c__UBA9160;o__UBA9160;f__UBA6930;g__DSOP01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_018262315.1",
                "gtdb_species": "s__PR03 sp018262315",
                "ani": 76.239,
                "matched_fragments": 136,
                "total_fragments": 774,
                "gtdb_taxonomy": "d__Bacteria;p__Myxococcota_A;c__UBA9160;o__UBA9160;f__PR03;g__PR03",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_013215605.1",
                "gtdb_species": "s__JABSQW01 sp013215605",
                "ani": 76.1121,
                "matched_fragments": 136,
                "total_fragments": 774,
                "gtdb_taxonomy": "d__Bacteria;p__Myxococcota_A;c__UBA9160;o__UBA9160;f__SMWR01;g__JABSQW01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_016875225.1",
                "gtdb_species": "s__VGRW01 sp016875225",
                "ani": 76.1057,
                "matched_fragments": 111,
                "total_fragments": 774,
                "gtdb_taxonomy": "d__Bacteria;p__Myxococcota_A;c__UBA9160;o__SZUA-336;f__SZUA-336;g__VGRW01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_016713665.1",
                "gtdb_species": "s__JADJOR01 sp016713665",
                "ani": 75.9154,
                "matched_fragments": 141,
                "total_fragments": 774,
                "gtdb_taxonomy": "d__Bacteria;p__Myxococcota_A;c__UBA9160;o__UBA9160;f__UBA4427;g__JADJOR01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_009908425.1",
                "gtdb_species": "s__JAAAPF01 sp009908425",
                "ani": 74.9845,
                "matched_fragments": 60,
                "total_fragments": 774,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Geminicoccales;f__Geminicoccaceae;g__JAAAPF01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_015709205.1",
                "gtdb_species": "s__JACCQO01 sp015709205",
                "ani": 74.9323,
                "matched_fragments": 75,
                "total_fragments": 774,
                "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota_I;c__Desulfovibrionia;o__Desulfovibrionales;f__Desulfovibrionaceae;g__JACCQO01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_000017645.1",
                "gtdb_species": "s__Xanthobacter autotrophicus",
                "ani": 74.8851,
                "matched_fragments": 67,
                "total_fragments": 774,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Xanthobacteraceae;g__Xanthobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_004135735.1",
                "gtdb_species": "s__Sorangium cellulosum_F",
                "ani": 74.8099,
                "matched_fragments": 127,
                "total_fragments": 774,
                "gtdb_taxonomy": "d__Bacteria;p__Myxococcota;c__Polyangia;o__Polyangiales;f__Polyangiaceae;g__Sorangium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_015390235.1",
                "gtdb_species": "s__Quadrisphaera sp015390235",
                "ani": 74.6116,
                "matched_fragments": 78,
                "total_fragments": 774,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Quadrisphaeraceae;g__Quadrisphaera",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Myxococcota_A",
        "c__UBA9160",
        "o__UBA9160",
        "f__JAFDET01",
        "g__JAFDET01",
        "s__JAFDET01 sp019310195"
    ],
    "_genome_taxon": [
        "Deltaproteobacteria",
        "bacterium",
        "d__Bacteria",
        "p__Myxococcota_A",
        "c__UBA9160",
        "o__UBA9160",
        "f__JAFDET01",
        "g__JAFDET01",
        "s__JAFDET01 sp019310195",
        "Bacteria",
        "Myxococcota",
        "A",
        "UBA9160",
        "UBA9160",
        "JAFDET01",
        "JAFDET01",
        "JAFDET01",
        "sp019310195"
    ],
    "_meo": [
        {
            "id": "MEO_0000031",
            "label": "hydrothermal vent"
        },
        {
            "id": "MEO_0000066",
            "label": "sediment"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}