{
    "type": "genome",
    "identifier": "GCA_019310965.1",
    "organism": "Deltaproteobacteria bacterium",
    "title": "Deltaproteobacteria bacterium",
    "description": "derived from metagenome; genus undefined",
    "data type": "Genome sequencing and assembly",
    "organization": "The University of Texas at Austin",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_019310965.1",
        "bioproject": "PRJNA688516",
        "biosample": "SAMN17179279",
        "wgs_master": "JAFDDG000000000.1",
        "refseq_category": "na",
        "taxid": "2026735",
        "species_taxid": "2026735",
        "organism_name": "Deltaproteobacteria bacterium",
        "infraspecific_name": "",
        "isolate": "Meg19_02_Bin_77",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2021/07/21",
        "asm_name": "ASM1931096v1",
        "submitter": "The University of Texas at Austin",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/310/965/GCA_019310965.1_ASM1931096v1",
        "excluded_from_refseq": "derived from metagenome; genus undefined",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2021-07-21",
    "dateModified": "2021-07-21",
    "datePublished": "2021-07-21",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Deltaproteobacteria bacterium"
        ],
        "sample_taxid": [
            "2026735"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "USA: Guaymas Basin, Gulf of California"
        ],
        "sample_host_location_id": [],
        "data_size": "1.286 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 83.33,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "4655161",
        "Number of Sequences": "158",
        "Longest Sequences (bp)": "149747",
        "N50 (bp)": "41259",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "67.8",
        "Number of CDSs": "4075",
        "Average Protein Length": "334.8",
        "Coding Ratio (%)": "87.9",
        "Number of rRNAs": "1",
        "Number of tRNAs": "42",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Deferrisoma camini",
                "strain": "strain=S3R1",
                "accession": "GCA_000526155.1",
                "taxid": 1035120,
                "species_taxid": 1035120,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.292,
                "matched_fragments": 55,
                "total_fragments": 1474,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Dokdonella koreensis",
                "strain": "strain=DS-123",
                "accession": "GCA_001632775.1",
                "taxid": 323415,
                "species_taxid": 323415,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.1293,
                "matched_fragments": 98,
                "total_fragments": 1474,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Rhabdothermincola salaria",
                "strain": "strain=EGI L10124",
                "accession": "GCA_021246445.1",
                "taxid": 2903142,
                "species_taxid": 2903142,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.0855,
                "matched_fragments": 88,
                "total_fragments": 1474,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Haliangium ochraceum",
                "strain": "strain=DSM 14365",
                "accession": "GCA_000024805.1",
                "taxid": 80816,
                "species_taxid": 80816,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.0831,
                "matched_fragments": 190,
                "total_fragments": 1474,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Corallococcus silvisoli",
                "strain": "strain=c25j21",
                "accession": "GCA_009909145.1",
                "taxid": 2697031,
                "species_taxid": 2697031,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.0691,
                "matched_fragments": 96,
                "total_fragments": 1474,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Halomonas heilongjiangensis",
                "strain": "strain=DSM 26881",
                "accession": "GCA_002879645.1",
                "taxid": 1387883,
                "species_taxid": 1387883,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.0039,
                "matched_fragments": 67,
                "total_fragments": 1474,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Halomonas heilongjiangensis",
                "strain": "strain=9-2",
                "accession": "GCA_003202165.1",
                "taxid": 1387883,
                "species_taxid": 1387883,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.9909,
                "matched_fragments": 69,
                "total_fragments": 1474,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Patulibacter minatonensis",
                "strain": "strain=DSM 18081",
                "accession": "GCA_000519325.1",
                "taxid": 298163,
                "species_taxid": 298163,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.9824,
                "matched_fragments": 91,
                "total_fragments": 1474,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pleomorphomonas carboxyditropha",
                "strain": "strain=SVCO-16",
                "accession": "GCA_002770725.1",
                "taxid": 2023338,
                "species_taxid": 2023338,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.9475,
                "matched_fragments": 86,
                "total_fragments": 1474,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Myxococcus eversor",
                "strain": "strain=AB053B",
                "accession": "GCA_010894455.1",
                "taxid": 2709661,
                "species_taxid": 2709661,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.9376,
                "matched_fragments": 112,
                "total_fragments": 1474,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Myxococcus llanfairpwllgwyngyllgogerychwyrndrobwllllantysiliogogogochensis",
                "strain": "strain=AM401",
                "accession": "GCA_006636215.1",
                "taxid": 2590453,
                "species_taxid": 2590453,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.936,
                "matched_fragments": 108,
                "total_fragments": 1474,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Verticiella sediminum",
                "strain": "strain=DSM 27279",
                "accession": "GCA_007558815.1",
                "taxid": 1247510,
                "species_taxid": 1247510,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.8631,
                "matched_fragments": 88,
                "total_fragments": 1474,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Patulibacter americanus",
                "strain": "strain=DSM 16676",
                "accession": "GCA_000420025.1",
                "taxid": 588672,
                "species_taxid": 588672,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.8556,
                "matched_fragments": 96,
                "total_fragments": 1474,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Asanoa ishikariensis",
                "strain": "strain=NBRC 14551",
                "accession": "GCA_016862535.1",
                "taxid": 137265,
                "species_taxid": 137265,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.8369,
                "matched_fragments": 121,
                "total_fragments": 1474,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Asanoa ishikariensis",
                "strain": "strain=DSM 44718",
                "accession": "GCA_900107455.1",
                "taxid": 137265,
                "species_taxid": 137265,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.8354,
                "matched_fragments": 121,
                "total_fragments": 1474,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Corallococcus terminator",
                "strain": "strain=CA054A",
                "accession": "GCA_003611635.1",
                "taxid": 2316733,
                "species_taxid": 2316733,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.791,
                "matched_fragments": 93,
                "total_fragments": 1474,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bordetella parapertussis",
                "strain": "strain=NCTC5952",
                "accession": "GCA_900445785.1",
                "taxid": 519,
                "species_taxid": 519,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 74.7663,
                "matched_fragments": 76,
                "total_fragments": 1474,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bordetella parapertussis",
                "strain": "strain=FDAARGOS_1541",
                "accession": "GCA_020735925.1",
                "taxid": 519,
                "species_taxid": 519,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 74.7586,
                "matched_fragments": 78,
                "total_fragments": 1474,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Solirubrobacter pauli",
                "strain": "strain=DSM 14954",
                "accession": "GCA_003633755.1",
                "taxid": 166793,
                "species_taxid": 166793,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.7551,
                "matched_fragments": 150,
                "total_fragments": 1474,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Stigmatella erecta",
                "strain": "strain=DSM 16858",
                "accession": "GCA_900111745.1",
                "taxid": 83460,
                "species_taxid": 83460,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.7196,
                "matched_fragments": 96,
                "total_fragments": 1474,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bordetella pertussis",
                "strain": "strain=18323",
                "accession": "GCA_000306945.1",
                "taxid": 520,
                "species_taxid": 520,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.6483,
                "matched_fragments": 73,
                "total_fragments": 1474,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bordetella pertussis",
                "strain": "strain=FDAARGOS_1543",
                "accession": "GCA_020736265.1",
                "taxid": 520,
                "species_taxid": 520,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.6472,
                "matched_fragments": 74,
                "total_fragments": 1474,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 83.33,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_002729515.1",
                "gtdb_species": "s__GCA-2729515 sp002729515",
                "ani": 77.4177,
                "matched_fragments": 342,
                "total_fragments": 1474,
                "gtdb_taxonomy": "d__Bacteria;p__Myxococcota_A;c__UBA9160;o__UBA9160;f__SMWR01;g__GCA-2729515",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_004356735.1",
                "gtdb_species": "s__SMWR01 sp004356735",
                "ani": 77.294,
                "matched_fragments": 183,
                "total_fragments": 1474,
                "gtdb_taxonomy": "d__Bacteria;p__Myxococcota_A;c__UBA9160;o__UBA9160;f__SMWR01;g__SMWR01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_013215605.1",
                "gtdb_species": "s__JABSQW01 sp013215605",
                "ani": 76.8047,
                "matched_fragments": 280,
                "total_fragments": 1474,
                "gtdb_taxonomy": "d__Bacteria;p__Myxococcota_A;c__UBA9160;o__UBA9160;f__SMWR01;g__JABSQW01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_003576805.1",
                "gtdb_species": "s__PR03 sp003576805",
                "ani": 76.6478,
                "matched_fragments": 279,
                "total_fragments": 1474,
                "gtdb_taxonomy": "d__Bacteria;p__Myxococcota_A;c__UBA9160;o__UBA9160;f__PR03;g__PR03",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_011055735.1",
                "gtdb_species": "s__DSOP01 sp011055735",
                "ani": 76.2985,
                "matched_fragments": 255,
                "total_fragments": 1474,
                "gtdb_taxonomy": "d__Bacteria;p__Myxococcota_A;c__UBA9160;o__UBA9160;f__UBA6930;g__DSOP01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_016875395.1",
                "gtdb_species": "s__VGRF01 sp016875395",
                "ani": 76.2969,
                "matched_fragments": 243,
                "total_fragments": 1474,
                "gtdb_taxonomy": "d__Bacteria;p__Myxococcota_A;c__UBA9160;o__UBA9160;f__UBA6930;g__VGRF01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_900696485.1",
                "gtdb_species": "s__CAADGG01 sp900696485",
                "ani": 76.1181,
                "matched_fragments": 202,
                "total_fragments": 1474,
                "gtdb_taxonomy": "d__Bacteria;p__Myxococcota_A;c__UBA9160;o__UBA9160;f__PR03;g__CAADGG01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.84",
                "min_intra_species_ani": "99.84",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.91",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_016713665.1",
                "gtdb_species": "s__JADJOR01 sp016713665",
                "ani": 76.0942,
                "matched_fragments": 259,
                "total_fragments": 1474,
                "gtdb_taxonomy": "d__Bacteria;p__Myxococcota_A;c__UBA9160;o__UBA9160;f__UBA4427;g__JADJOR01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_016875225.1",
                "gtdb_species": "s__VGRW01 sp016875225",
                "ani": 75.7242,
                "matched_fragments": 166,
                "total_fragments": 1474,
                "gtdb_taxonomy": "d__Bacteria;p__Myxococcota_A;c__UBA9160;o__SZUA-336;f__SZUA-336;g__VGRW01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_016615815.1",
                "gtdb_species": "s__Luteimonas sp016615815",
                "ani": 75.0853,
                "matched_fragments": 74,
                "total_fragments": 1474,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Luteimonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.14",
                "min_intra_species_ani": "98.29",
                "mean_intra_species_af": "0.98",
                "min_intra_species_af": "0.95",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_017302495.1",
                "gtdb_species": "s__Rubrivivax sp017302495",
                "ani": 75.0763,
                "matched_fragments": 95,
                "total_fragments": 1474,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Rubrivivax",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_013294065.1",
                "gtdb_species": "s__Sphaerotilus sp013294065",
                "ani": 75.0685,
                "matched_fragments": 116,
                "total_fragments": 1474,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Sphaerotilus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_014236855.1",
                "gtdb_species": "s__Xanthomonas_A sp014236855",
                "ani": 75.0326,
                "matched_fragments": 86,
                "total_fragments": 1474,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Xanthomonas_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "95.82",
                "min_intra_species_ani": "95.01",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 7,
                "status": "-"
            },
            {
                "accession": "GCF_014197395.1",
                "gtdb_species": "s__Xanthomonas_A translucens_B",
                "ani": 74.8974,
                "matched_fragments": 93,
                "total_fragments": 1474,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Xanthomonas_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_016209015.1",
                "gtdb_species": "s__JACQWY01 sp016209015",
                "ani": 74.7779,
                "matched_fragments": 104,
                "total_fragments": 1474,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Ga0077536;f__Ga0077536;g__JACQWY01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.49",
                "min_intra_species_ani": "99.49",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.94",
                "num_clustered_genomes": 2,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Myxococcota_A",
        "c__UBA9160",
        "o__UBA9160",
        "f__SMWR01",
        "g__GCA-2729515",
        "s__GCA-2729515 sp019310965"
    ],
    "_genome_taxon": [
        "Deltaproteobacteria",
        "bacterium",
        "d__Bacteria",
        "p__Myxococcota_A",
        "c__UBA9160",
        "o__UBA9160",
        "f__SMWR01",
        "g__GCA-2729515",
        "s__GCA-2729515 sp019310965",
        "Bacteria",
        "Myxococcota",
        "A",
        "UBA9160",
        "UBA9160",
        "SMWR01",
        "GCA-2729515",
        "GCA-2729515",
        "sp019310965"
    ],
    "_meo": [
        {
            "id": "MEO_0000031",
            "label": "hydrothermal vent"
        },
        {
            "id": "MEO_0000066",
            "label": "sediment"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}