{ "type": "genome", "identifier": "GCA_019310975.1", "organism": "Deltaproteobacteria bacterium", "title": "Deltaproteobacteria bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "The University of Texas at Austin", "publication": [ {} ], "properties": { "assembly_accession": "GCA_019310975.1", "bioproject": "PRJNA688516", "biosample": "SAMN17179280", "wgs_master": "JAFDDH000000000.1", "refseq_category": "na", "taxid": "2026735", "species_taxid": "2026735", "organism_name": "Deltaproteobacteria bacterium", "infraspecific_name": "", "isolate": "Meg19_02_Bin_79", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/07/21", "asm_name": "ASM1931097v1", "submitter": "The University of Texas at Austin", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/310/975/GCA_019310975.1_ASM1931097v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-07-21", "dateModified": "2021-07-21", "datePublished": "2021-07-21", "_annotation": { "sample_count": 1, "sample_organism": [ "Deltaproteobacteria bacterium" ], "sample_taxid": [ "2026735" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA: Guaymas Basin, Gulf of California" ], "sample_host_location_id": [], "data_size": "1.487 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 69.44, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "5354922", "Number of Sequences": "477", "Longest Sequences (bp)": "97901", "N50 (bp)": "17549", "Gap Ratio (%)": "0.000037", "GCcontent (%)": "66.4", "Number of CDSs": "4326", "Average Protein Length": "334.4", "Coding Ratio (%)": "81.0", "Number of rRNAs": "0", "Number of tRNAs": "32", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Blastochloris tepida", "strain": "strain=GI", "accession": "GCA_003966715.1", "taxid": 2233851, "species_taxid": 2233851, "relation_to_type": "type", "validated": true, "ani": 74.9284, "matched_fragments": 63, "total_fragments": 1548, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Myxococcus vastator", "strain": "strain=AM301", "accession": "GCA_010894475.1", "taxid": 2709664, "species_taxid": 2709664, "relation_to_type": "type", "validated": true, "ani": 74.8849, "matched_fragments": 69, "total_fragments": 1548, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Azospirillum rugosum", "strain": "strain=IMMIB AFH-6", "accession": "GCA_017876155.1", "taxid": 416170, "species_taxid": 416170, "relation_to_type": "type", "validated": true, "ani": 74.8663, "matched_fragments": 98, "total_fragments": 1548, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pyxidicoccus caerfyrddinensis", "strain": "strain=CA032A", "accession": "GCA_010894405.1", "taxid": 2709663, "species_taxid": 2709663, "relation_to_type": "type", "validated": true, "ani": 74.8661, "matched_fragments": 121, "total_fragments": 1548, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesorhizobium caraganae", "strain": "strain=LMG 24397", "accession": "GCA_016836705.1", "taxid": 483206, "species_taxid": 483206, "relation_to_type": "type", "validated": true, "ani": 74.844, "matched_fragments": 51, "total_fragments": 1548, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodanobacter fulvus", "strain": "strain=Jip2", "accession": "GCA_000264315.1", "taxid": 219571, "species_taxid": 219571, "relation_to_type": "type", "validated": true, "ani": 74.8411, "matched_fragments": 53, "total_fragments": 1548, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Azospirillum agricola", "strain": "strain=CC-HIH038", "accession": "GCA_017876095.1", "taxid": 1720247, "species_taxid": 1720247, "relation_to_type": "type", "validated": true, "ani": 74.8283, "matched_fragments": 102, "total_fragments": 1548, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces zinciresistens", "strain": "strain=K42", "accession": "GCA_000225525.2", "taxid": 1073330, "species_taxid": 1073330, "relation_to_type": "type", "validated": true, "ani": 74.7876, "matched_fragments": 92, "total_fragments": 1548, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lichenibacterium ramalinae", "strain": "strain=RmlP001", "accession": "GCA_004137085.1", "taxid": 2316527, "species_taxid": 2316527, "relation_to_type": "type", "validated": true, "ani": 74.7715, "matched_fragments": 86, "total_fragments": 1548, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Stenotrophomonas acidaminiphila", "strain": "strain=DSM 13117", "accession": "GCA_024221815.1", "taxid": 128780, "species_taxid": 128780, "relation_to_type": "type", "validated": true, "ani": 74.7682, "matched_fragments": 56, "total_fragments": 1548, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Stenotrophomonas acidaminiphila", "strain": "strain=JCM 13310", "accession": "GCA_001431595.1", "taxid": 128780, "species_taxid": 128780, "relation_to_type": "type", "validated": true, "ani": 74.7652, "matched_fragments": 54, "total_fragments": 1548, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesorhizobium atlanticum", "strain": "strain=CNPSo 3140", "accession": "GCA_003289965.1", "taxid": 2233532, "species_taxid": 2233532, "relation_to_type": "type", "validated": true, "ani": 74.7644, "matched_fragments": 67, "total_fragments": 1548, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nannocystis exedens", "strain": "strain=ATCC 25963", "accession": "GCA_900112715.1", "taxid": 54, "species_taxid": 54, "relation_to_type": "type", "validated": true, "ani": 74.7602, "matched_fragments": 201, "total_fragments": 1548, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nannocystis exedens", "strain": "strain=DSM 71", "accession": "GCA_002343915.1", "taxid": 54, "species_taxid": 54, "relation_to_type": "type", "validated": true, "ani": 74.7555, "matched_fragments": 206, "total_fragments": 1548, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraconexibacter algicola", "strain": "strain=Seoho-28", "accession": "GCA_003044185.1", "taxid": 2133960, "species_taxid": 2133960, "relation_to_type": "type", "validated": true, "ani": 74.727, "matched_fragments": 103, "total_fragments": 1548, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Myxococcus llanfairpwllgwyngyllgogerychwyrndrobwllllantysiliogogogochensis", "strain": "strain=AM401", "accession": "GCA_006636215.1", "taxid": 2590453, "species_taxid": 2590453, "relation_to_type": "type", "validated": true, "ani": 74.6979, "matched_fragments": 86, "total_fragments": 1548, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinophytocola oryzae", "strain": "strain=DSM 45499", "accession": "GCA_004364325.1", "taxid": 502181, "species_taxid": 502181, "relation_to_type": "type", "validated": true, "ani": 74.685, "matched_fragments": 122, "total_fragments": 1548, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Capillimicrobium parvum", "strain": "strain=0166_1", "accession": "GCA_021172045.1", "taxid": 2884022, "species_taxid": 2884022, 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74.6143, "matched_fragments": 52, "total_fragments": 1548, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 69.44, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_016713665.1", "gtdb_species": "s__JADJOR01 sp016713665", "ani": 76.4992, "matched_fragments": 283, "total_fragments": 1548, "gtdb_taxonomy": "d__Bacteria;p__Myxococcota_A;c__UBA9160;o__UBA9160;f__UBA4427;g__JADJOR01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_014240165.1", "gtdb_species": "s__JAZXM01 sp014240165", "ani": 76.3648, "matched_fragments": 178, "total_fragments": 1548, "gtdb_taxonomy": "d__Bacteria;p__Myxococcota_A;c__UBA9160;o__UBA9160;f__UBA4427;g__JAZXM01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_002687015.1", "gtdb_species": "s__GCA-2687015 sp002687015", "ani": 76.2317, "matched_fragments": 214, "total_fragments": 1548, "gtdb_taxonomy": "d__Bacteria;p__Myxococcota_A;c__UBA9160;o__UBA9160;f__UBA6930;g__GCA-2687015", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_013215615.1", "gtdb_species": "s__JABSQX01 sp013215615", "ani": 76.0685, "matched_fragments": 157, "total_fragments": 1548, "gtdb_taxonomy": "d__Bacteria;p__Myxococcota_A;c__UBA9160;o__UBA9160;f__SMWR01;g__JABSQX01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, 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