{ "tc_result": [ { "organism_name": "Roseburia inulinivorans", "strain": "strain=DSM 16841", "accession": "GCA_000174195.1", "taxid": 360807, "species_taxid": 360807, "relation_to_type": "suspected-type", "validated": true, "ani": 97.6561, "matched_fragments": 549, "total_fragments": 703, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Roseburia intestinalis", "strain": "strain=L1 82", "accession": "GCA_025151715.1", "taxid": 166486, "species_taxid": 166486, "relation_to_type": "type", "validated": true, "ani": 80.556, "matched_fragments": 225, "total_fragments": 703, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseburia intestinalis", "strain": "strain=L1-82", "accession": "GCA_900537995.1", "taxid": 166486, "species_taxid": 166486, "relation_to_type": "type", "validated": true, "ani": 80.5304, "matched_fragments": 224, "total_fragments": 703, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseburia intestinalis", "strain": "strain=L1-82", "accession": "GCA_000156535.1", "taxid": 166486, "species_taxid": 166486, "relation_to_type": "type", "validated": true, "ani": 80.4571, "matched_fragments": 222, "total_fragments": 703, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Coprococcus comes", "strain": "strain=ATCC 27758", "accession": "GCA_025149785.1", "taxid": 410072, "species_taxid": 410072, "relation_to_type": "type", "validated": true, "ani": 79.3946, "matched_fragments": 84, "total_fragments": 703, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseburia hominis", "strain": "strain=A2-183", "accession": "GCA_000225345.1", "taxid": 301301, "species_taxid": 301301, "relation_to_type": "type", "validated": true, "ani": 79.0404, "matched_fragments": 165, "total_fragments": 703, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Blautia obeum", "strain": "strain=ATCC 29174", "accession": "GCA_025147765.1", "taxid": 40520, "species_taxid": 40520, "relation_to_type": "type", "validated": true, "ani": 78.6486, "matched_fragments": 65, "total_fragments": 703, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseburia porci", "strain": "strain=MUC/MUC-530-WT-4D", "accession": "GCA_009695765.1", "taxid": 2605790, "species_taxid": 2605790, "relation_to_type": "type", "validated": true, "ani": 78.1062, "matched_fragments": 147, "total_fragments": 703, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Agathobacter ruminis", "strain": "strain=JK623", "accession": "GCA_002735305.1", "taxid": 1712665, "species_taxid": 1712665, "relation_to_type": "type", "validated": true, "ani": 77.5024, "matched_fragments": 52, "total_fragments": 703, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseburia lenta", "strain": "strain=NSJ-9", "accession": "GCA_014287435.1", "taxid": 2763061, "species_taxid": 2763061, "relation_to_type": "type", "validated": true, "ani": 77.113, "matched_fragments": 56, "total_fragments": 703, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hominisplanchenecus faecis", "strain": "strain=CLA-AA-H246", "accession": "GCA_020687205.1", "taxid": 2885351, "species_taxid": 2885351, "relation_to_type": "type", "validated": true, "ani": 76.9113, "matched_fragments": 79, "total_fragments": 703, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 88.43, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000174195.1", "gtdb_species": "s__Roseburia inulinivorans", "ani": 97.6561, "matched_fragments": 549, "total_fragments": 703, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Roseburia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.45", "min_intra_species_ani": "95.90", "mean_intra_species_af": "0.77", "min_intra_species_af": "0.61", "num_clustered_genomes": 28, "status": "conclusive" }, { "accession": "GCA_900542495.1", "gtdb_species": "s__Roseburia sp900542495", "ani": 89.3798, "matched_fragments": 479, "total_fragments": 703, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Roseburia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.47", "min_intra_species_ani": "97.09", "mean_intra_species_af": "0.82", "min_intra_species_af": "0.76", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_900537995.1", "gtdb_species": "s__Roseburia intestinalis", "ani": 80.5036, "matched_fragments": 225, "total_fragments": 703, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Roseburia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.51", "min_intra_species_ani": "98.07", "mean_intra_species_af": "0.86", "min_intra_species_af": "0.80", "num_clustered_genomes": 21, "status": "-" }, { "accession": "GCA_900756925.1", "gtdb_species": "s__Roseburia sp900756925", "ani": 79.9496, "matched_fragments": 153, "total_fragments": 703, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Roseburia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.83", "min_intra_species_ani": "98.83", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.90", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_003483745.1", "gtdb_species": "s__Roseburia sp003483745", "ani": 79.319, "matched_fragments": 207, "total_fragments": 703, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Roseburia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.45", "min_intra_species_ani": "97.41", "mean_intra_species_af": "0.84", "min_intra_species_af": "0.84", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_900550935.1", "gtdb_species": "s__Roseburia sp900550935", "ani": 79.1067, "matched_fragments": 171, "total_fragments": 703, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Roseburia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.33", "min_intra_species_ani": "98.19", "mean_intra_species_af": "0.83", "min_intra_species_af": "0.82", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_001940165.1", "gtdb_species": "s__Roseburia sp001940165", "ani": 79.0777, "matched_fragments": 177, "total_fragments": 703, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Roseburia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000225345.1", "gtdb_species": "s__Roseburia hominis", "ani": 79.0264, "matched_fragments": 166, 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"d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Agathobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.03", "min_intra_species_ani": "95.54", "mean_intra_species_af": "0.78", "min_intra_species_af": "0.69", "num_clustered_genomes": 7, "status": "-" }, { "accession": "GCA_014804775.1", "gtdb_species": "s__Roseburia sp014804775", "ani": 76.9851, "matched_fragments": 90, "total_fragments": 703, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Roseburia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }