{ "type": "genome", "identifier": "GCA_019415385.1", "organism": "Kluyvera georgiana", "title": "Kluyvera georgiana", "description": "derived from metagenome; genome length too small", "data type": "Genome sequencing and assembly", "organization": "Yonsei University", "publication": [ {} ], "properties": { "assembly_accession": "GCA_019415385.1", "bioproject": "PRJNA730993", "biosample": "SAMN19224530", "wgs_master": "DXKF00000000.1", "refseq_category": "na", "taxid": "73098", "species_taxid": "73098", "organism_name": "Kluyvera georgiana", "infraspecific_name": "", "isolate": "HRGM_Genome_0064", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/07/30", "asm_name": "ASM1941538v1", "submitter": "Yonsei University", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/415/385/GCA_019415385.1_ASM1941538v1", "excluded_from_refseq": "derived from metagenome; genome length too small", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-07-30", "dateModified": "2021-07-30", "datePublished": "2021-07-30", "_annotation": { "sample_count": 1, "sample_organism": [ "Kluyvera georgiana" ], "sample_taxid": [ "73098" ], "sample_host_organism": [ "Homo sapiens" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Japan" ], "sample_host_location_id": [], "data_size": "1.198 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 33.33, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "4199873", "Number of Sequences": "196", "Longest Sequences (bp)": "96579", "N50 (bp)": "34248", "Gap Ratio (%)": "0.045811", "GCcontent (%)": "55.5", "Number of CDSs": "3808", "Average Protein Length": "314.9", "Coding Ratio (%)": "85.6", "Number of rRNAs": "0", "Number of tRNAs": "13", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Kluyvera georgiana", "strain": "strain=ATCC 51603", "accession": "GCA_001654985.1", "taxid": 73098, "species_taxid": 73098, "relation_to_type": "type", "validated": true, "ani": 94.495, "matched_fragments": 1109, "total_fragments": 1301, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kluyvera sichuanensis", "strain": "strain=090646", "accession": "GCA_014218705.1", "taxid": 2725494, "species_taxid": 2725494, "relation_to_type": "type", "validated": true, "ani": 86.5143, "matched_fragments": 1016, "total_fragments": 1301, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kluyvera ascorbata", "strain": "strain=ATCC 33433", "accession": "GCA_000735365.1", "taxid": 51288, "species_taxid": 51288, "relation_to_type": "suspected-type", "validated": true, "ani": 86.2905, "matched_fragments": 1000, "total_fragments": 1301, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kluyvera intermedia", "strain": "strain=NBRC 102594", "accession": "GCA_001598315.1", "taxid": 61648, "species_taxid": 61648, "relation_to_type": "suspected-type", "validated": true, "ani": 84.6022, "matched_fragments": 965, "total_fragments": 1301, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kluyvera intermedia", "strain": "strain=NCTC12125", "accession": "GCA_900635475.1", "taxid": 61648, "species_taxid": 61648, "relation_to_type": "suspected-type", "validated": true, "ani": 84.5883, "matched_fragments": 978, "total_fragments": 1301, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudocitrobacter corydidari", "strain": "", "accession": "GCA_021172065.1", "taxid": 2891570, "species_taxid": 2891570, "relation_to_type": "type", "validated": true, "ani": 82.1185, "matched_fragments": 899, "total_fragments": 1301, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudocitrobacter vendiensis", "strain": "strain=type strain: CPO20170097", "accession": "GCA_943590815.1", "taxid": 2488306, "species_taxid": 2488306, "relation_to_type": "type", "validated": true, "ani": 81.9465, "matched_fragments": 845, "total_fragments": 1301, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Klebsiella pneumoniae subsp. pneumoniae", "strain": "strain=ATCC 13883", "accession": "GCA_000788015.1", "taxid": 72407, "species_taxid": 573, "relation_to_type": "type", "validated": true, "ani": 81.3736, "matched_fragments": 774, "total_fragments": 1301, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Klebsiella pneumoniae", "strain": "strain=PartO-Kpneumoniae-RM8376", "accession": "GCA_022869665.1", "taxid": 573, "species_taxid": 573, "relation_to_type": "type", "validated": true, "ani": 81.3516, "matched_fragments": 760, "total_fragments": 1301, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Klebsiella pneumoniae", "strain": "strain=FDAARGOS_775", "accession": "GCA_006364295.1", "taxid": 573, "species_taxid": 573, "relation_to_type": "type", "validated": true, "ani": 81.2943, "matched_fragments": 784, "total_fragments": 1301, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Klebsiella pneumoniae subsp. pneumoniae", "strain": "strain=NBRC 14940", "accession": "GCA_001590945.1", "taxid": 72407, "species_taxid": 573, "relation_to_type": "type", "validated": true, "ani": 81.2803, "matched_fragments": 768, "total_fragments": 1301, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Klebsiella pneumoniae", "strain": "strain=ATCC 13883", "accession": "GCA_000742135.1", "taxid": 573, "species_taxid": 573, "relation_to_type": "type", "validated": true, "ani": 81.2794, "matched_fragments": 777, "total_fragments": 1301, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Klebsiella pneumoniae subsp. pneumoniae", "strain": "strain=DSM 30104", "accession": "GCA_000281755.1", "taxid": 72407, "species_taxid": 573, "relation_to_type": "type", "validated": true, "ani": 81.2275, "matched_fragments": 779, "total_fragments": 1301, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter wuhouensis", "strain": "strain=WCHEW120002", "accession": "GCA_004331265.1", "taxid": 2529381, "species_taxid": 2529381, "relation_to_type": "type", "validated": true, "ani": 81.2082, "matched_fragments": 800, "total_fragments": 1301, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter bugandensis", "strain": "", "accession": "GCA_900324475.1", "taxid": 881260, "species_taxid": 881260, "relation_to_type": "type", "validated": true, "ani": 81.0876, 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"below_threshold" }, { "organism_name": "Salmonella enterica subsp. enterica", "strain": "strain=PartC-Senterica-RM8376", "accession": "GCA_022869965.1", "taxid": 59201, "species_taxid": 28901, "relation_to_type": "suspected-type", "validated": true, "ani": 80.5065, "matched_fragments": 618, "total_fragments": 1301, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 33.33, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_002211745.1", "gtdb_species": "s__Kluyvera georgiana_A", "ani": 98.0811, "matched_fragments": 1226, "total_fragments": 1301, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Kluyvera", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.12", "min_intra_species_ani": "98.12", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.89", "num_clustered_genomes": 2, "status": "conclusive" }, { "accession": 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