{
    "type": "genome",
    "identifier": "GCA_019455265.1",
    "organism": "Simplicispira suum",
    "title": "Simplicispira suum",
    "description": "derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "SciBear LLC",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_019455265.1",
        "bioproject": "PRJNA647942",
        "biosample": "SAMN15615526",
        "wgs_master": "JACFMT000000000.1",
        "refseq_category": "na",
        "taxid": "2109915",
        "species_taxid": "2109915",
        "organism_name": "Simplicispira suum",
        "infraspecific_name": "",
        "isolate": "BROCD005",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2021/08/05",
        "asm_name": "ASM1945526v1",
        "submitter": "SciBear LLC",
        "gbrs_paired_asm": "GCF_019455265.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/455/265/GCA_019455265.1_ASM1945526v1",
        "excluded_from_refseq": "derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2021-08-05",
    "dateModified": "2021-08-05",
    "datePublished": "2021-08-05",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Simplicispira suum"
        ],
        "sample_taxid": [
            "2109915"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Netherlands: Rotterdam"
        ],
        "sample_host_location_id": [],
        "data_size": "1.057 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 89.81,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "3782899",
        "Number of Sequences": "61",
        "Longest Sequences (bp)": "290176",
        "N50 (bp)": "113436",
        "Gap Ratio (%)": "0.010574",
        "GCcontent (%)": "63.7",
        "Number of CDSs": "3448",
        "Average Protein Length": "328.1",
        "Coding Ratio (%)": "89.7",
        "Number of rRNAs": "1",
        "Number of tRNAs": "41",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Simplicispira suum",
                "strain": "strain=SC1-8",
                "accession": "GCA_003008595.1",
                "taxid": 2109915,
                "species_taxid": 2109915,
                "relation_to_type": "type",
                "validated": true,
                "ani": 98.5579,
                "matched_fragments": 1180,
                "total_fragments": 1230,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Simplicispira hankyongi",
                "strain": "strain=NY-02",
                "accession": "GCA_003570885.1",
                "taxid": 2315688,
                "species_taxid": 2315688,
                "relation_to_type": "type",
                "validated": true,
                "ani": 84.6795,
                "matched_fragments": 901,
                "total_fragments": 1230,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Acidovorax soli",
                "strain": "strain=DSM 25157",
                "accession": "GCA_900107605.1",
                "taxid": 592050,
                "species_taxid": 592050,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.7239,
                "matched_fragments": 637,
                "total_fragments": 1230,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Acidovorax carolinensis",
                "strain": "strain=NA3",
                "accession": "GCA_002157145.1",
                "taxid": 553814,
                "species_taxid": 553814,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.364,
                "matched_fragments": 640,
                "total_fragments": 1230,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Acidovorax kalamii",
                "strain": "strain=KNDSW-TSA6",
                "accession": "GCA_002245625.1",
                "taxid": 2004485,
                "species_taxid": 2004485,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.2706,
                "matched_fragments": 661,
                "total_fragments": 1230,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Simplicispira metamorpha",
                "strain": "strain=NBRC 13960",
                "accession": "GCA_003568725.1",
                "taxid": 80881,
                "species_taxid": 80881,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.2161,
                "matched_fragments": 535,
                "total_fragments": 1230,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Simplicispira metamorpha",
                "strain": "strain=DSM 1837",
                "accession": "GCA_004341365.1",
                "taxid": 80881,
                "species_taxid": 80881,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.172,
                "matched_fragments": 544,
                "total_fragments": 1230,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Acidovorax facilis",
                "strain": "strain=DSM 649",
                "accession": "GCA_023913775.1",
                "taxid": 12917,
                "species_taxid": 12917,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.9662,
                "matched_fragments": 634,
                "total_fragments": 1230,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Acidovorax wautersii",
                "strain": "strain=DSM 27981",
                "accession": "GCA_900113035.1",
                "taxid": 1177982,
                "species_taxid": 1177982,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.9119,
                "matched_fragments": 603,
                "total_fragments": 1230,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Simplicispira psychrophila",
                "strain": "strain=DSM 11588",
                "accession": "GCA_000688255.1",
                "taxid": 80882,
                "species_taxid": 80882,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.56,
                "matched_fragments": 519,
                "total_fragments": 1230,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Melaminivora alkalimesophila",
                "strain": "strain=CY1",
                "accession": "GCA_000282995.1",
                "taxid": 1165852,
                "species_taxid": 1165852,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.4198,
                "matched_fragments": 357,
                "total_fragments": 1230,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Hydrogenophaga crocea",
                "strain": "strain=BA0156",
                "accession": "GCA_011388215.1",
                "taxid": 2716225,
                "species_taxid": 2716225,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.0969,
                "matched_fragments": 459,
                "total_fragments": 1230,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Delftia acidovorans",
                "strain": "strain=NBRC 14950",
                "accession": "GCA_001598795.1",
                "taxid": 80866,
                "species_taxid": 80866,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.0726,
                "matched_fragments": 554,
                "total_fragments": 1230,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Delftia acidovorans",
                "strain": "strain=FDAARGOS_997",
                "accession": "GCA_016127415.1",
                "taxid": 80866,
                "species_taxid": 80866,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.071,
                "matched_fragments": 560,
                "total_fragments": 1230,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Extensimonas perlucida",
                "strain": "strain=HX2-24",
                "accession": "GCA_007655255.1",
                "taxid": 2590786,
                "species_taxid": 2590786,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.7781,
                "matched_fragments": 454,
                "total_fragments": 1230,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Ramlibacter pinisoli",
                "strain": "strain=MAH-25",
                "accession": "GCA_009758015.1",
                "taxid": 2682844,
                "species_taxid": 2682844,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.6979,
                "matched_fragments": 441,
                "total_fragments": 1230,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Comamonas koreensis",
                "strain": "strain=KCTC 12005",
                "accession": "GCA_021026195.1",
                "taxid": 160825,
                "species_taxid": 160825,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.3047,
                "matched_fragments": 418,
                "total_fragments": 1230,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Ramlibacter agri",
                "strain": "strain=G-1-2-2",
                "accession": "GCA_012927085.1",
                "taxid": 2728837,
                "species_taxid": 2728837,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.2176,
                "matched_fragments": 458,
                "total_fragments": 1230,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 89.81,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_003008595.1",
                "gtdb_species": "s__Giesbergeria suum",
                "ani": 98.5579,
                "matched_fragments": 1180,
                "total_fragments": 1230,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Giesbergeria",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCA_017985015.1",
                "gtdb_species": "s__Giesbergeria sp017985015",
                "ani": 88.2388,
                "matched_fragments": 892,
                "total_fragments": 1230,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Giesbergeria",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.01",
                "min_intra_species_ani": "95.86",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.90",
                "num_clustered_genomes": 6,
                "status": "-"
            },
            {
                "accession": "GCF_003570885.1",
                "gtdb_species": "s__Giesbergeria hankyongi",
                "ani": 84.6948,
                "matched_fragments": 899,
                "total_fragments": 1230,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Giesbergeria",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_001724785.1",
                "gtdb_species": "s__Giesbergeria sp001724785",
                "ani": 82.5636,
                "matched_fragments": 577,
                "total_fragments": 1230,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Giesbergeria",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003096555.1",
                "gtdb_species": "s__Giesbergeria sp003096555",
                "ani": 81.5814,
                "matched_fragments": 716,
                "total_fragments": 1230,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Giesbergeria",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.19",
                "min_intra_species_ani": "98.39",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.90",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_003604195.1",
                "gtdb_species": "s__Giesbergeria lacusdiani",
                "ani": 81.3043,
                "matched_fragments": 712,
                "total_fragments": 1230,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Giesbergeria",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_012932145.1",
                "gtdb_species": "s__Giesbergeria sp012932145",
                "ani": 81.1067,
                "matched_fragments": 657,
                "total_fragments": 1230,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Giesbergeria",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.72",
                "min_intra_species_ani": "98.72",
                "mean_intra_species_af": "0.89",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_000739995.1",
                "gtdb_species": "s__Giesbergeria granuli",
                "ani": 80.8465,
                "matched_fragments": 654,
                "total_fragments": 1230,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Giesbergeria",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "95.66",
                "min_intra_species_ani": "95.66",
                "mean_intra_species_af": "0.85",
                "min_intra_species_af": "0.85",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_001770955.1",
                "gtdb_species": "s__Giesbergeria sp001770955",
                "ani": 80.7298,
                "matched_fragments": 652,
                "total_fragments": 1230,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Giesbergeria",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.11",
                "min_intra_species_ani": "95.02",
                "mean_intra_species_af": "0.83",
                "min_intra_species_af": "0.80",
                "num_clustered_genomes": 5,
                "status": "-"
            },
            {
                "accession": "GCF_010020825.1",
                "gtdb_species": "s__Giesbergeria sp010020825",
                "ani": 80.7223,
                "matched_fragments": 662,
                "total_fragments": 1230,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Giesbergeria",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.40",
                "min_intra_species_ani": "98.40",
                "mean_intra_species_af": "0.98",
                "min_intra_species_af": "0.98",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_014207955.1",
                "gtdb_species": "s__Acidovorax soli_A",
                "ani": 80.0476,
                "matched_fragments": 697,
                "total_fragments": 1230,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Acidovorax",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_003755025.1",
                "gtdb_species": "s__Diaphorobacter nitroreducens",
                "ani": 79.802,
                "matched_fragments": 572,
                "total_fragments": 1230,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Diaphorobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.11",
                "min_intra_species_ani": "97.62",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.81",
                "num_clustered_genomes": 15,
                "status": "-"
            },
            {
                "accession": "GCA_018240985.1",
                "gtdb_species": "s__Alicycliphilus sp018240985",
                "ani": 79.7009,
                "matched_fragments": 503,
                "total_fragments": 1230,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Alicycliphilus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.65",
                "min_intra_species_ani": "99.65",
                "mean_intra_species_af": "0.85",
                "min_intra_species_af": "0.85",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_000282995.1",
                "gtdb_species": "s__Melaminivora alkalimesophila",
                "ani": 79.4259,
                "matched_fragments": 357,
                "total_fragments": 1230,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Melaminivora",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.95",
                "min_intra_species_ani": "99.95",
                "mean_intra_species_af": "0.97",
                "min_intra_species_af": "0.97",
                "num_clustered_genomes": 2,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.14,
        "cell_length": 0.19,
        "doubling_h": null,
        "growth_tmp": 24.889,
        "optimum_tmp": 25.0,
        "optimum_ph": null,
        "genome_size": 3600773.0,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": 0.0,
        "sporulation": null,
        "motility": 1.0,
        "range_salinity": null,
        "facultative_respiration": 0.333,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 0.666,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": 0.5,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.5
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Pseudomonadota",
        "c__Gammaproteobacteria",
        "o__Burkholderiales",
        "f__Burkholderiaceae",
        "g__Giesbergeria",
        "s__Giesbergeria suum"
    ],
    "_genome_taxon": [
        "Simplicispira",
        "suum",
        "d__Bacteria",
        "p__Pseudomonadota",
        "c__Gammaproteobacteria",
        "o__Burkholderiales",
        "f__Burkholderiaceae",
        "g__Giesbergeria",
        "s__Giesbergeria suum",
        "Bacteria",
        "Pseudomonadota",
        "Gammaproteobacteria",
        "Burkholderiales",
        "Burkholderiaceae",
        "Giesbergeria",
        "Giesbergeria",
        "suum"
    ],
    "_meo": [
        {
            "id": "MEO_0000035",
            "label": "waste water"
        },
        {
            "id": "MEO_0000119",
            "label": "bioreactor"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}