{
    "type": "genome",
    "identifier": "GCA_019459185.1",
    "organism": "Rhizobium sp.",
    "title": "Rhizobium sp.",
    "description": "derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "Colledge of Environmental Sciences and Engineering, Peking University",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_019459185.1",
        "bioproject": "PRJNA749639",
        "biosample": "SAMN20395965",
        "wgs_master": "JAIBEO000000000.1",
        "refseq_category": "na",
        "taxid": "391",
        "species_taxid": "391",
        "organism_name": "Rhizobium sp.",
        "infraspecific_name": "",
        "isolate": "B101_concoct.bin.4",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2021/08/08",
        "asm_name": "ASM1945918v1",
        "submitter": "Colledge of Environmental Sciences and Engineering, Peking University",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/459/185/GCA_019459185.1_ASM1945918v1",
        "excluded_from_refseq": "derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2021-08-08",
    "dateModified": "2021-08-08",
    "datePublished": "2021-08-08",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Rhizobium sp."
        ],
        "sample_taxid": [
            "391"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Canada: Calgary"
        ],
        "sample_host_location_id": [],
        "data_size": "0.836 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "3103630",
        "Number of Sequences": "267",
        "Longest Sequences (bp)": "86319",
        "N50 (bp)": "17996",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "69.8",
        "Number of CDSs": "2751",
        "Average Protein Length": "330.2",
        "Coding Ratio (%)": "87.8",
        "Number of rRNAs": "0",
        "Number of tRNAs": "44",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Arenimonas malthae",
                "strain": "strain=CC-JY-1",
                "accession": "GCA_000747075.1",
                "taxid": 354197,
                "species_taxid": 354197,
                "relation_to_type": "type",
                "validated": true,
                "ani": 94.2937,
                "matched_fragments": 716,
                "total_fragments": 892,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Arenimonas caeni",
                "strain": "strain=z29",
                "accession": "GCA_003024235.1",
                "taxid": 2058085,
                "species_taxid": 2058085,
                "relation_to_type": "type",
                "validated": true,
                "ani": 87.6526,
                "matched_fragments": 657,
                "total_fragments": 892,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Arenimonas metalli",
                "strain": "strain=CF5-1",
                "accession": "GCA_000747155.1",
                "taxid": 948077,
                "species_taxid": 948077,
                "relation_to_type": "type",
                "validated": true,
                "ani": 86.633,
                "matched_fragments": 639,
                "total_fragments": 892,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Arenimonas soli",
                "strain": "strain=CGMCC 1.15905",
                "accession": "GCA_014643775.1",
                "taxid": 2269504,
                "species_taxid": 2269504,
                "relation_to_type": "type",
                "validated": true,
                "ani": 86.5274,
                "matched_fragments": 678,
                "total_fragments": 892,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Arenimonas terrae",
                "strain": "strain=R29",
                "accession": "GCA_006265115.1",
                "taxid": 2546226,
                "species_taxid": 2546226,
                "relation_to_type": "type",
                "validated": true,
                "ani": 86.141,
                "matched_fragments": 666,
                "total_fragments": 892,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Arenimonas donghaensis",
                "strain": "strain=HO3-R19",
                "accession": "GCA_000743535.1",
                "taxid": 375061,
                "species_taxid": 375061,
                "relation_to_type": "type",
                "validated": true,
                "ani": 85.6852,
                "matched_fragments": 650,
                "total_fragments": 892,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Luteimonas colneyensis",
                "strain": "strain=Sa2BVA3",
                "accession": "GCA_014836665.1",
                "taxid": 2762230,
                "species_taxid": 2762230,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.4002,
                "matched_fragments": 479,
                "total_fragments": 892,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Luteimonas lumbrici",
                "strain": "strain=1.1416",
                "accession": "GCA_006476065.1",
                "taxid": 2559601,
                "species_taxid": 2559601,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.3851,
                "matched_fragments": 419,
                "total_fragments": 892,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudoxanthomonas helianthi",
                "strain": "strain=110414",
                "accession": "GCA_017939625.1",
                "taxid": 1453541,
                "species_taxid": 1453541,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.9761,
                "matched_fragments": 406,
                "total_fragments": 892,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Stenotrophomonas nitritireducens",
                "strain": "strain=DSM 12575",
                "accession": "GCA_001431425.1",
                "taxid": 83617,
                "species_taxid": 83617,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.9542,
                "matched_fragments": 449,
                "total_fragments": 892,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Xanthomonas indica",
                "strain": "strain=PPL560",
                "accession": "GCA_022669045.1",
                "taxid": 2912242,
                "species_taxid": 2912242,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.5305,
                "matched_fragments": 480,
                "total_fragments": 892,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_000747075.1",
                "gtdb_species": "s__Arenimonas malthae",
                "ani": 94.2972,
                "matched_fragments": 715,
                "total_fragments": 892,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Arenimonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_003497545.1",
                "gtdb_species": "s__Arenimonas sp003497545",
                "ani": 93.8154,
                "matched_fragments": 558,
                "total_fragments": 892,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Arenimonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.43",
                "min_intra_species_ani": "99.43",
                "mean_intra_species_af": "0.81",
                "min_intra_species_af": "0.81",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_001724815.1",
                "gtdb_species": "s__Arenimonas sp001724815",
                "ani": 87.7102,
                "matched_fragments": 673,
                "total_fragments": 892,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Arenimonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003024235.1",
                "gtdb_species": "s__Arenimonas caeni",
                "ani": 87.686,
                "matched_fragments": 655,
                "total_fragments": 892,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Arenimonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000747155.1",
                "gtdb_species": "s__Arenimonas metalli",
                "ani": 86.6634,
                "matched_fragments": 637,
                "total_fragments": 892,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Arenimonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_014643775.1",
                "gtdb_species": "s__Arenimonas soli",
                "ani": 86.5451,
                "matched_fragments": 677,
                "total_fragments": 892,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Arenimonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_006265115.1",
                "gtdb_species": "s__Arenimonas terrae",
                "ani": 86.1325,
                "matched_fragments": 666,
                "total_fragments": 892,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Arenimonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000743535.1",
                "gtdb_species": "s__Arenimonas donghaensis",
                "ani": 85.6683,
                "matched_fragments": 651,
                "total_fragments": 892,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Arenimonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_007993735.1",
                "gtdb_species": "s__Arenimonas daejeonensis",
                "ani": 85.6641,
                "matched_fragments": 645,
                "total_fragments": 892,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Arenimonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_003241895.1",
                "gtdb_species": "s__Arenimonas sp003241895",
                "ani": 85.0461,
                "matched_fragments": 622,
                "total_fragments": 892,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Arenimonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001431645.1",
                "gtdb_species": "s__Stenotrophomonas_A panacihumi",
                "ani": 79.9124,
                "matched_fragments": 431,
                "total_fragments": 892,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Stenotrophomonas_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.98",
                "min_intra_species_ani": "99.98",
                "mean_intra_species_af": "0.99",
                "min_intra_species_af": "0.99",
                "num_clustered_genomes": 2,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.23,
        "cell_length": 0.207,
        "doubling_h": 0.225,
        "growth_tmp": 28.733,
        "optimum_tmp": 28.423,
        "optimum_ph": 6.983,
        "genome_size": 6239444.624,
        "gc_content": 60.147,
        "coding_genes": 6587.615,
        "rRNA16S_genes": 3.0,
        "tRNA_genes": 51.725,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 0.793,
        "range_salinity": null,
        "facultative_respiration": 0.05,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 0.95,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Pseudomonadota",
        "c__Gammaproteobacteria",
        "o__Xanthomonadales",
        "f__Xanthomonadaceae",
        "g__Arenimonas",
        "s__Arenimonas sp019459185"
    ],
    "_genome_taxon": [
        "Rhizobium",
        "sp.",
        "d__Bacteria",
        "p__Pseudomonadota",
        "c__Gammaproteobacteria",
        "o__Xanthomonadales",
        "f__Xanthomonadaceae",
        "g__Arenimonas",
        "s__Arenimonas sp019459185",
        "Bacteria",
        "Pseudomonadota",
        "Gammaproteobacteria",
        "Xanthomonadales",
        "Xanthomonadaceae",
        "Arenimonas",
        "Arenimonas",
        "sp019459185"
    ],
    "_meo": [
        {
            "id": "MEO_0000688",
            "label": "river sediment"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}