{ "type": "genome", "identifier": "GCA_019459245.1", "organism": "Pseudomonas sp.", "title": "Pseudomonas sp.", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "Colledge of Environmental Sciences and Engineering, Peking University", "publication": [ {} ], "properties": { "assembly_accession": "GCA_019459245.1", "bioproject": "PRJNA749639", "biosample": "SAMN20395979", "wgs_master": "JAIBFC000000000.1", "refseq_category": "na", "taxid": "306", "species_taxid": "306", "organism_name": "Pseudomonas sp.", "infraspecific_name": "", "isolate": "C32_concoct.bin.14", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/08/08", "asm_name": "ASM1945924v1", "submitter": "Colledge of Environmental Sciences and Engineering, Peking University", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/459/245/GCA_019459245.1_ASM1945924v1", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-08-08", "dateModified": "2021-08-08", "datePublished": "2021-08-08", "_annotation": { "sample_count": 1, "sample_organism": [ "Pseudomonas sp." ], "sample_taxid": [ "306" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Canada: Calgary" ], "sample_host_location_id": [], "data_size": "1.883 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "6742584", "Number of Sequences": "108", "Longest Sequences (bp)": "325710", "N50 (bp)": "127479", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "62.4", "Number of CDSs": "6030", "Average Protein Length": "327.8", "Coding Ratio (%)": "88.0", "Number of rRNAs": "1", "Number of tRNAs": "61", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Pseudomonas protegens", "strain": "strain=CHA0", "accession": "GCA_000397205.1", "taxid": 380021, "species_taxid": 380021, "relation_to_type": "type", "validated": true, "ani": 90.631, "matched_fragments": 1896, "total_fragments": 2196, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas protegens", "strain": "strain=CHA0", "accession": "GCA_900560965.1", "taxid": 380021, "species_taxid": 380021, "relation_to_type": "type", "validated": true, "ani": 90.584, "matched_fragments": 1904, "total_fragments": 2196, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas sessilinigenes", "strain": "strain=CMR12a", "accession": "GCA_003850565.1", "taxid": 658629, "species_taxid": 658629, "relation_to_type": "type", "validated": true, "ani": 87.2919, "matched_fragments": 1733, "total_fragments": 2196, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas sessilinigenes", "strain": "strain=CMR12a", "accession": "GCA_019139855.1", "taxid": 658629, "species_taxid": 658629, "relation_to_type": "type", "validated": true, "ani": 87.235, "matched_fragments": 1717, "total_fragments": 2196, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas chlororaphis subsp. aureofaciens", "strain": "strain=NBRC 3521", "accession": "GCA_000813225.1", "taxid": 587851, "species_taxid": 587753, "relation_to_type": "type", "validated": true, "ani": 86.2004, "matched_fragments": 1568, "total_fragments": 2196, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas chlororaphis subsp. piscium", "strain": "strain=DSM 21509", "accession": "GCA_001269555.1", "taxid": 1513890, "species_taxid": 587753, "relation_to_type": "type", "validated": true, "ani": 86.1949, "matched_fragments": 1594, "total_fragments": 2196, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas chlororaphis subsp. aureofaciens", "strain": "strain=LMG 1245", "accession": "GCA_001269575.1", "taxid": 587851, "species_taxid": 587753, "relation_to_type": "type", "validated": true, "ani": 86.1825, "matched_fragments": 1566, "total_fragments": 2196, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas chlororaphis subsp. piscium", "strain": "strain=DSM 21509", "accession": "GCA_003850345.1", "taxid": 1513890, "species_taxid": 587753, "relation_to_type": "type", "validated": true, "ani": 86.1799, "matched_fragments": 1576, "total_fragments": 2196, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas chlororaphis subsp. aureofaciens", "strain": "strain=DSM 6698", "accession": "GCA_003851905.1", "taxid": 587851, "species_taxid": 587753, "relation_to_type": "type", "validated": true, "ani": 86.171, "matched_fragments": 1598, "total_fragments": 2196, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas chlororaphis subsp. aurantiaca", "strain": "strain=DSM 19603", "accession": "GCA_003851835.1", "taxid": 86192, "species_taxid": 587753, "relation_to_type": "type", "validated": true, "ani": 86.1389, "matched_fragments": 1601, "total_fragments": 2196, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas pergaminensis", "strain": "strain=1008", "accession": "GCA_024112395.1", "taxid": 2853159, "species_taxid": 2853159, "relation_to_type": "type", "validated": true, "ani": 83.2346, "matched_fragments": 1308, "total_fragments": 2196, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas spelaei", "strain": "strain=CCM 7893", "accession": "GCA_009724245.1", "taxid": 1055469, "species_taxid": 1055469, "relation_to_type": "type", "validated": true, "ani": 83.2092, "matched_fragments": 1298, "total_fragments": 2196, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas faucium", "strain": "strain=BML-PP048", "accession": "GCA_013373935.1", "taxid": 2740518, "species_taxid": 2740518, "relation_to_type": "type", "validated": true, "ani": 81.9972, "matched_fragments": 1028, "total_fragments": 2196, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas bharatica", "strain": "strain=CSV86", "accession": "GCA_000319305.2", "taxid": 2692112, "species_taxid": 2692112, "relation_to_type": "type", "validated": true, "ani": 81.9835, "matched_fragments": 1085, "total_fragments": 2196, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas faucium", "strain": "strain=BML-PP048", "accession": 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