# locus_id	locus_tag	location	classification	internal_stop	indel	ref_id	description	query_cov	ref_cov	identity
MGA_19	LOCUS_0180	sequence1:17228..17590(-)	partial			WP_010948044.1	RNA polymerase-binding protein DksA	81.7	62.0	55.1
MGA_21	LOCUS_0200	sequence1:17910..18323(-)	frameshift,internal_stop_codon	18347..18349(-)	18343	WP_000683574.1	adenosine kinase	89.1	37.2	36.1
MGA_22	LOCUS_0210	sequence1:18347..18916(-)	frameshift		18349	WP_007339822.1	adenosine kinase	100.0	55.3	37.7
MGA_28	LOCUS_0270	sequence1:24237..24584(-)	frameshift		24694	WP_003129241.1	peptidoglycan DD-metalloendopeptidase family protein	68.7	17.7	58.2
MGA_29	LOCUS_0280	sequence1:24692..25528(-)	frameshift,internal_stop_codon	24692..24694(-)	24688	WP_011706904.1	peptidoglycan DD-metalloendopeptidase family protein	75.9	47.5	29.9
MGA_32	LOCUS_0300	sequence1:31872..32450(-)	partial			WP_000446246.1	type II pantothenate kinase	89.6	62.7	27.7
MGA_35	LOCUS_0330	sequence1:33515..34102(+)	partial			WP_010942717.1	S8 family peptidase	53.3	21.4	31.1
MGA_37	LOCUS_0350	sequence1:35960..36826(-)	frameshift,internal_stop_codon	36832..36834(-)	36810	WP_004195328.1	ferritin-like domain-containing protein	82.6	72.5	35.0
MGA_39	LOCUS_0370	sequence1:37105..37542(-)	frameshift		37579	WP_004195328.1	ferritin-like domain-containing protein	84.1	37.3	28.7
MGA_40	LOCUS_0380	sequence1:37562..37876(-)	frameshift,internal_stop_codon	37924..37926(-)	37848,37954,37581	WP_004195328.1	ferritin-like domain-containing protein	90.4	28.7	42.6
MGA_42	LOCUS_0400	sequence1:38273..38725(-)	frameshift		38802	WP_013529369.1	cobaltochelatase subunit CobT	98.0	23.2	74.1
MGA_43	LOCUS_0410	sequence1:38689..40029(-)	frameshift		38802	WP_009566423.1	cobaltochelatase subunit CobT	92.4	70.1	33.9
MGA_47	LOCUS_0450	sequence1:42783..43355(+)	frameshift		43346,43343	WP_010970482.1	acyl-CoA thioesterase II	93.7	60.2	56.7
MGA_48	LOCUS_0460	sequence1:43381..43656(+)	frameshift		43337	WP_011036345.1	acyl-CoA thioesterase II	97.8	29.6	60.7
MGA_49	LOCUS_0470	sequence1:43704..44330(-)	frameshift		44377,43831	WP_007330518.1	glutamate synthase subunit beta	79.8	34.8	54.0
MGA_50	LOCUS_0480	sequence1:44369..45118(-)	frameshift		44377	WP_007330518.1	glutamate synthase subunit beta	99.2	48.6	59.5
MGA_51	LOCUS_0490	sequence1:45111..46109(-)	frameshift		46168	WP_011120560.1	glutamate synthase large subunit	99.1	21.8	56.8
MGA_52	LOCUS_0500	sequence1:46145..46978(-)	frameshift		47006,46172,47102	WP_011120560.1	glutamate synthase large subunit	99.3	18.1	80.4
MGA_53	LOCUS_0510	sequence1:47249..49663(-)	frameshift		47104,47290,47008	WP_011120560.1	glutamate synthase large subunit	97.1	51.4	58.0
MGA_56	LOCUS_0540	sequence1:51457..53139(+)	frameshift		53236,53118	WP_003114576.1	penicillin-binding protein 1A	99.5	63.7	46.1
MGA_57	LOCUS_0550	sequence1:53232..53744(+)	frameshift		53236,53118	WP_011266375.1	penicillin-binding protein 1A	98.2	25.3	36.5
MGA_58	LOCUS_0560	sequence1:53737..54153(-)	frameshift		54155,54070	WP_005478760.1	nucleoid occlusion factor SlmA	82.6	57.7	29.8
MGA_59	LOCUS_0570	sequence1:54150..54326(-)	frameshift		54091,54155	WP_005417043.1	nucleoid occlusion factor SlmA	91.4	28.1	56.4
MGA_61	LOCUS_0590	sequence1:55194..56558(-)	partial			WP_003114359.1	phosphomannomutase/phosphoglucomutase	98.5	51.7	47.4
MGA_62	LOCUS_0600	sequence1:56692..57294(+)	frameshift		57285	WP_003095783.1	branched-chain-amino-acid transaminase	97.5	63.8	57.1
MGA_63	LOCUS_0610	sequence1:57279..57566(+)	frameshift		57285	WP_003095783.1	branched-chain-amino-acid transaminase	94.7	29.3	58.9
MGA_64	LOCUS_0620	sequence1:57703..58584(+)	frameshift		57722	WP_000699228.1	ADP-heptose--LPS heptosyltransferase RfaF	96.6	82.8	45.7
MGA_66	LOCUS_0640	sequence1:59690..60145(+)	frameshift		60136,60290	WP_003114553.1	lipopolysaccharide core heptose(I) kinase RfaP	97.4	54.9	36.1
MGA_69	LOCUS_0670	sequence1:61183..62013(+)	frameshift		61953,62052	WP_011028276.1	glycosyltransferase family 4 protein	91.3	51.6	40.7
MGA_73	LOCUS_0710	sequence1:64118..64372(-)	frameshift		64440,64317,64398	WP_011731308.1	class I SAM-dependent methyltransferase	77.4	29.1	49.2
MGA_74	LOCUS_0720	sequence1:64402..64683(-)	frameshift		64398,64317,64446	WP_011731308.1	class I SAM-dependent methyltransferase	94.6	40.8	46.2
MGA_75	LOCUS_0730	sequence1:64822..65061(+)	frameshift		65055	WP_010880334.1	D-glycero-beta-D-manno-heptose-7-phosphate kinase	97.5	24.4	62.3
MGA_76	LOCUS_0740	sequence1:65289..66233(+)	frameshift		65058	WP_003095747.1	bifunctional D-glycero-beta-D-manno-heptose-7-phosphate kinase/D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase HldE	96.5	64.1	51.1
MGA_81	LOCUS_0790	sequence1:69996..70571(+)	frameshift		70511	WP_011071065.1	ammonium transporter	99.5	44.0	59.5
MGA_82	LOCUS_0800	sequence1:70513..71220(+)	frameshift		70511	WP_005490371.1	ammonium transporter	99.6	57.2	54.9
MGA_86	LOCUS_0840	sequence1:73461..74141(+)	frameshift		74057	WP_011070933.1	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	85.8	62.0	46.4
MGA_87	LOCUS_0850	sequence1:74119..74400(+)	frameshift		74057	WP_011070933.1	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	84.9	25.6	43.0
MGA_88	LOCUS_0860	sequence1:74397..75347(+)	frameshift		75428,75581,75335	WP_010957944.1	GTPase HflX	96.5	66.3	55.1
MGA_89	LOCUS_0870	sequence1:75695..76006(+)	frameshift		75985	WP_005460667.1	FtsH protease activity modulator HflK	94.2	26.8	38.0
MGA_90	LOCUS_0880	sequence1:75957..76559(+)	frameshift		75994,76547	WP_011266497.1	FtsH protease activity modulator HflK	91.0	45.5	56.6
MGA_91	LOCUS_0890	sequence1:76528..76746(+)	frameshift		76547	WP_011262723.1	FtsH protease activity modulator HflK	80.6	14.5	58.6
MGA_95	LOCUS_0930	sequence1:78338..78667(+)	frameshift		78252	WP_015063927.1	ATP phosphoribosyltransferase regulatory subunit	93.6	25.7	41.2
MGA_96	LOCUS_0940	sequence1:78711..78863(+)	frameshift		78834,78918,78822,78888,78714	WP_003021829.1	adenylosuccinate synthase	80.0	9.3	70.0
MGA_97	LOCUS_0950	sequence1:78965..79951(+)	frameshift		78714,78819,78886,78919	WP_003095642.1	adenylosuccinate synthase	98.8	76.0	47.1
MGA_98	LOCUS_0960	sequence1:80697..82082(+)	frameshift		81288,81243,82078,80655	WP_000426795.1	DUF3604 domain-containing protein	99.6	63.1	41.0
MGA_99	LOCUS_0970	sequence1:82163..82525(+)	frameshift		82076	WP_000426795.1	DUF3604 domain-containing protein	95.0	15.5	52.2
MGA_100	LOCUS_0980	sequence1:82553..82846(-)	partial			WP_005650345.1	transcription antitermination factor NusB	72.2	49.3	37.5
MGA_101	LOCUS_0990	sequence1:83902..84456(-)	frameshift		83696,83910,83879	WP_001122865.1	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	99.5	49.6	70.5
MGA_103	LOCUS_1010	sequence1:85556..85870(-)	partial			WP_003107181.1	transcriptional regulator NrdR	100.0	66.9	62.5
MGA_121	LOCUS_1190	sequence1:102489..103187(+)	frameshift		103184,103313	WP_003114496.1	thiolase family protein	100.0	58.6	61.6
MGA_122	LOCUS_1200	sequence1:103359..103682(+)	frameshift		103184,103313	WP_003114496.1	thiolase family protein	98.1	26.6	76.2
MGA_124	LOCUS_1220	sequence1:104878..105114(+)	internal_stop_codon	104779..104781(+),104770..104772(+)		WP_002208663.1	phosphatidylglycerophosphatase A	97.4	46.6	44.2
MGA_126	LOCUS_1240	sequence1:105736..106425(-)	frameshift		106445	WP_005483016.1	1-deoxy-D-xylulose-5-phosphate synthase	98.7	36.1	56.6
MGA_127	LOCUS_1250	sequence1:106401..107330(-)	frameshift		106444,107446	WP_003102816.1	1-deoxy-D-xylulose-5-phosphate synthase	95.8	46.7	59.8
MGA_128	LOCUS_1260	sequence1:107444..107629(-)	frameshift		107446	WP_002117085.1	1-deoxy-D-xylulose-5-phosphate synthase	96.7	9.3	47.5
MGA_133	LOCUS_1310	sequence1:109822..110739(-)	partial			WP_011963893.1	TonB-dependent receptor	81.3	34.6	26.2
MGA_134	LOCUS_1320	sequence1:111063..111947(-)	frameshift		111937,111199	WP_011262580.1	efflux RND transporter permease subunit	97.3	26.8	40.6
MGA_135	LOCUS_1330	sequence1:112033..113769(-)	frameshift		113972,111935,112055	WP_011262580.1	efflux RND transporter permease subunit	91.0	51.1	39.1
MGA_138	LOCUS_1360	sequence1:116089..116880(-)	frameshift		116912,117084	WP_001109196.1	3-deoxy-7-phosphoheptulonate synthase AroG	98.9	74.3	65.0
MGA_140	LOCUS_1380	sequence1:118969..119238(+)	frameshift		119211	WP_011037357.1	ScpA family protein	70.8	21.3	65.6
MGA_141	LOCUS_1390	sequence1:119238..119807(+)	frameshift		119214	WP_003124353.1	ScpA family protein	96.8	73.6	51.1
MGA_142	LOCUS_1400	sequence1:119807..120394(+)	partial			WP_176994036.1	SMC-Scp complex subunit ScpB	95.9	50.0	49.5
MGA_143	LOCUS_1410	sequence1:120398..121135(+)	partial			WP_003113439.1	23S rRNA pseudouridine(2605) synthase RluB	97.6	62.2	54.2
MGA_146	LOCUS_1440	sequence1:122513..122851(-)	frameshift,internal_stop_codon	122941..122943(-)	122934,123079	WP_005804826.1	bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG	94.6	44.7	64.2
MGA_147	LOCUS_1450	sequence1:122941..123093(-)	frameshift,internal_stop_codon	122941..122943(-)	123085,122934	WP_010970076.1	bifunctional 3-demethylubiquinone 3-O-methyltransferase/2-octaprenyl-6-hydroxy phenol methylase	92.0	18.5	47.8
MGA_148	LOCUS_1460	sequence1:123273..123587(+)	frameshift		123569	WP_063838431.1	Re/Si-specific NAD(P)(+) transhydrogenase subunit alpha	96.2	26.7	41.6
MGA_149	LOCUS_1470	sequence1:123619..124392(+)	frameshift		123569	WP_063838431.1	Re/Si-specific NAD(P)(+) transhydrogenase subunit alpha	99.6	67.7	66.0
MGA_154	LOCUS_1520	sequence1:128767..129357(+)	frameshift		129348	WP_003106701.1	3-phosphoserine/phosphohydroxythreonine transaminase	98.5	53.7	51.0
MGA_155	LOCUS_1530	sequence1:129369..129851(+)	frameshift		129351	WP_005456169.1	3-phosphoserine/phosphohydroxythreonine transaminase	98.8	43.4	56.3
MGA_157	LOCUS_1550	sequence1:130249..130917(+)	frameshift		130209,130035,130134	WP_005616461.1	prephenate dehydratase	99.5	60.7	45.7
MGA_166	LOCUS_1640	sequence1:139220..140461(+)	partial			WP_007244046.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	68.5	59.0	34.6
MGA_167	LOCUS_1650	sequence1:140439..141638(+)	frameshift,internal_stop_codon	141779..141781(+)	141808,141633,141730,141724,141629,141775	WP_005693865.1	excinuclease ABC subunit UvrC	95.5	63.7	36.5
MGA_170	LOCUS_1680	sequence1:145639..145887(+)	frameshift,internal_stop_codon	145889..145891(+),146046..146048(+),145591..145593(+),146022..146024(+)	146147,145541,145737,145803,146093,145617,145433,145562,145981	WP_011706681.1	nucleotide sugar dehydrogenase	97.6	20.9	48.1
MGA_171	LOCUS_1690	sequence1:146693..147130(+)	frameshift,internal_stop_codon	146559..146561(+)	146681,147125	WP_011057042.1	NAD-dependent epimerase	97.9	42.0	73.9
MGA_172	LOCUS_1700	sequence1:147213..147692(+)	frameshift		147680,147674,147746	WP_014208043.1	Vi polysaccharide biosynthesis UDP-N-acetylglucosamine C-6 dehydrogenase TviB	94.3	34.8	64.7
MGA_173	LOCUS_1710	sequence1:147849..148046(+)	frameshift		147680,147749,148121,147674,147995	WP_010930471.1	Vi polysaccharide biosynthesis UDP-N-acetylglucosamine C-6 dehydrogenase TviB	73.8	11.2	81.2
MGA_174	LOCUS_1720	sequence1:147980..148153(+)	frameshift		147993,147747,148119	WP_011963428.1	nucleotide sugar dehydrogenase	75.4	10.2	58.1
MGA_175	LOCUS_1730	sequence1:148156..148476(+)	frameshift		147992,148115	WP_011073077.1	Vi polysaccharide biosynthesis UDP-N-acetylglucosamine C-6 dehydrogenase TviB	100.0	24.9	48.1
MGA_179	LOCUS_1770	sequence1:149675..149887(+)	frameshift		149885,149669,150052,149988	WP_001074915.1	ABC transporter ATP-binding protein	100.0	12.1	47.1
MGA_180	LOCUS_1780	sequence1:151009..151245(+)	frameshift		151285,150983,151257,151229,150863	WP_013097864.1	UDP-N-acetylglucosamine 4,6-dehydratase (inverting)	85.9	20.2	64.2
MGA_181	LOCUS_1790	sequence1:151435..152037(+)	partial			WP_012067163.1	Gfo/Idh/MocA family oxidoreductase	95.0	47.0	36.8
MGA_191	LOCUS_1890	sequence1:160913..161365(+)	frameshift		161299	WP_013529699.1	carbohydrate ABC transporter permease	80.0	38.2	49.2
MGA_192	LOCUS_1900	sequence1:161358..161819(+)	frameshift		161299	WP_005615493.1	carbohydrate ABC transporter permease	98.0	53.4	68.7
MGA_198	LOCUS_1960	sequence1:166860..167369(+)	partial			WP_011056556.1	pentapeptide repeat-containing protein	63.9	27.4	30.9
MGA_220	LOCUS_2180	sequence1:184454..185254(+)	frameshift,internal_stop_codon	185285..185287(+)	185236	WP_013531756.1	RIP metalloprotease RseP	86.8	59.7	42.9
MGA_221	LOCUS_2190	sequence1:185326..185562(+)	frameshift,internal_stop_codon	185252..185254(+)	185287	WP_011087622.1	RIP metalloprotease RseP	87.2	17.8	57.4
MGA_222	LOCUS_2200	sequence1:185719..185922(+)	frameshift		185904	WP_003153447.1	non-specific DNA-binding protein Hbs	100.0	71.7	43.3
MGA_241	LOCUS_2390	sequence2:6015..6386(+)	partial			WP_036892278.1	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	84.6	22.6	32.4
MGA_244	LOCUS_2420	sequence2:8173..8418(-)	partial			WP_011125260.1	iron-containing alcohol dehydrogenase family protein	93.8	20.2	44.7
MGA_245	LOCUS_2430	sequence2:8604..8735(+)	frameshift		8731,8554,8587,8822	WP_010920230.1	nitronate monooxygenase family protein	97.7	12.5	71.4
MGA_247	LOCUS_2450	sequence2:9649..9876(-)	frameshift		9865,9884	WP_004186294.1	thioredoxin-disulfide reductase	89.3	20.9	74.6
MGA_248	LOCUS_2460	sequence2:9867..10391(-)	frameshift		9884,10404,9868	WP_002121722.1	thioredoxin-disulfide reductase	97.1	55.6	54.9
MGA_249	LOCUS_2470	sequence2:10396..10581(-)	frameshift		10404	WP_011946716.1	thioredoxin-disulfide reductase	96.7	18.7	71.2
MGA_251	LOCUS_2490	sequence2:11131..11904(+)	frameshift		11832	WP_010895627.1	DNA translocase FtsK	90.3	31.3	34.6
MGA_252	LOCUS_2500	sequence2:12609..12989(+)	frameshift		12589	WP_003405080.1	DNA translocase FtsK	95.2	15.7	56.3
MGA_254	LOCUS_2520	sequence2:13840..14058(+)	frameshift		13856,14051,13844	WP_002858681.1	serine--tRNA ligase	93.1	17.3	40.8
MGA_255	LOCUS_2530	sequence2:14075..14644(+)	frameshift		14049,14611,14557	WP_005072887.1	serine--tRNA ligase	85.2	38.1	64.6
