{ "type": "genome", "identifier": "GCA_020025095.1", "organism": "Peptostreptococcus sp.", "title": "Peptostreptococcus sp.", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "Korea Polar Research Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCA_020025095.1", "bioproject": "PRJNA665590", "biosample": "SAMN19315118", "wgs_master": "JAHHSS000000000.1", "refseq_category": "na", "taxid": "1262", "species_taxid": "1262", "organism_name": "Peptostreptococcus sp.", "infraspecific_name": "", "isolate": "MAG062", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/09/17", "asm_name": "ASM2002509v1", "submitter": "Korea Polar Research Institute", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/020/025/095/GCA_020025095.1_ASM2002509v1", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-09-17", "dateModified": "2021-09-17", "datePublished": "2021-09-17", "_annotation": { "sample_count": 1, "sample_organism": [ "Peptostreptococcus sp." ], "sample_taxid": [ "1262" ], "sample_host_organism": [ "Leptonychotes weddellii" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Antarctica: King George Island" ], "sample_host_location_id": [], "data_size": "0.422 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "1523084", "Number of Sequences": "149", "Longest Sequences (bp)": "55586", "N50 (bp)": "15029", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "30.6", "Number of CDSs": "1267", "Average Protein Length": "329.8", "Coding Ratio (%)": "82.3", "Number of rRNAs": "0", "Number of tRNAs": "5", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Peptostreptococcus anaerobius", "strain": "strain=VPI 4330", "accession": "GCA_000318115.1", "taxid": 1261, "species_taxid": 1261, "relation_to_type": "type", "validated": true, "ani": 79.4913, "matched_fragments": 108, "total_fragments": 435, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Peptostreptococcus anaerobius", "strain": "strain=NCTC11460", "accession": "GCA_900454605.1", "taxid": 1261, "species_taxid": 1261, "relation_to_type": "type", "validated": true, "ani": 79.3811, "matched_fragments": 115, "total_fragments": 435, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Peptostreptococcus russellii", "strain": "strain=RT-10B", "accession": "GCA_003012055.1", "taxid": 215200, "species_taxid": 215200, "relation_to_type": "type", "validated": true, "ani": 79.3234, "matched_fragments": 223, "total_fragments": 435, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Peptostreptococcus stomatis", "strain": "strain=DSM 17678", "accession": "GCA_000147675.2", "taxid": 341694, "species_taxid": 341694, "relation_to_type": "type", "validated": true, "ani": 78.9896, "matched_fragments": 86, "total_fragments": 435, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Peptostreptococcus canis", "strain": "strain=DSM 27025", "accession": "GCA_017874285.1", "taxid": 1159213, "species_taxid": 1159213, "relation_to_type": "type", "validated": true, "ani": 78.4713, "matched_fragments": 147, "total_fragments": 435, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Peptostreptococcus canis", "strain": "strain=DSM 27025", "accession": "GCA_014229965.1", "taxid": 1159213, "species_taxid": 1159213, "relation_to_type": "type", "validated": true, "ani": 78.3656, "matched_fragments": 151, "total_fragments": 435, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Peptacetobacter hominis", "strain": "strain=ZHW00191", "accession": "GCA_006861675.1", "taxid": 2743610, "species_taxid": 2743610, "relation_to_type": "type", "validated": true, "ani": 77.2064, "matched_fragments": 74, "total_fragments": 435, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paeniclostridium sordellii", "strain": "strain=ATCC9714", "accession": "GCA_000953675.1", "taxid": 1505, "species_taxid": 1505, "relation_to_type": "type", "validated": true, "ani": 76.7013, "matched_fragments": 80, "total_fragments": 435, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Peptacetobacter hiranonis", "strain": "strain=DSM 13275", "accession": "GCA_008151785.1", "taxid": 89152, "species_taxid": 89152, "relation_to_type": "type", "validated": true, "ani": 76.6312, "matched_fragments": 73, "total_fragments": 435, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Peptacetobacter hiranonis", "strain": "strain=DSM 13275", "accession": "GCA_000156055.1", "taxid": 89152, "species_taxid": 89152, "relation_to_type": "type", "validated": true, "ani": 76.5105, "matched_fragments": 77, "total_fragments": 435, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Terrisporobacter petrolearius", "strain": "strain=LAM0A37", "accession": "GCA_020748185.1", "taxid": 1460447, "species_taxid": 1460447, "relation_to_type": "type", "validated": true, "ani": 76.469, "matched_fragments": 62, "total_fragments": 435, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Terrisporobacter othiniensis", "strain": "strain=08-306576", "accession": "GCA_000808015.1", "taxid": 1577792, "species_taxid": 1577792, "relation_to_type": "type", "validated": true, "ani": 76.3989, "matched_fragments": 72, "total_fragments": 435, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Terrisporobacter mayombei", "strain": "strain=DSM 6539", "accession": "GCA_020748465.1", "taxid": 1541, "species_taxid": 1541, "relation_to_type": "type", "validated": true, "ani": 76.1224, "matched_fragments": 75, "total_fragments": 435, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Terrisporobacter glycolicus", "strain": "strain=DSM 1288", "accession": "GCA_000439105.1", "taxid": 36841, "species_taxid": 36841, "relation_to_type": "suspected-type", "validated": true, "ani": 75.8943, "matched_fragments": 79, "total_fragments": 435, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_900110295.1", "gtdb_species": "s__Peptostreptococcus russellii_A", "ani": 84.5374, "matched_fragments": 373, "total_fragments": 435, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Peptostreptococcales;f__Peptostreptococcaceae;g__Peptostreptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.51", "min_intra_species_ani": "98.15", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.90", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_000381525.1", "gtdb_species": "s__Peptostreptococcus anaerobius", "ani": 79.4733, "matched_fragments": 108, "total_fragments": 435, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Peptostreptococcales;f__Peptostreptococcaceae;g__Peptostreptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.16", "min_intra_species_ani": "98.74", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.83", "num_clustered_genomes": 12, "status": "-" }, { "accession": "GCF_003012055.1", "gtdb_species": "s__Peptostreptococcus russellii", "ani": 79.3234, "matched_fragments": 223, "total_fragments": 435, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Peptostreptococcales;f__Peptostreptococcaceae;g__Peptostreptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.54", "min_intra_species_ani": "98.54", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.93", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_900759325.1", "gtdb_species": "s__Peptostreptococcus sp900759325", "ani": 79.0687, "matched_fragments": 66, "total_fragments": 435, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Peptostreptococcales;f__Peptostreptococcaceae;g__Peptostreptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.17", "min_intra_species_ani": "97.99", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.90", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_000147675.1", "gtdb_species": "s__Peptostreptococcus stomatis", "ani": 78.9896, "matched_fragments": 86, "total_fragments": 435, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Peptostreptococcales;f__Peptostreptococcaceae;g__Peptostreptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.69", "min_intra_species_ani": "97.69", "mean_intra_species_af": "0.87", "min_intra_species_af": "0.87", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_014229965.1", "gtdb_species": "s__Peptostreptococcus canis", "ani": 78.3396, "matched_fragments": 152, "total_fragments": 435, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Peptostreptococcales;f__Peptostreptococcaceae;g__Peptostreptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.99", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_900112955.1", "gtdb_species": "s__Peptostreptococcus sp900112955", "ani": 77.9216, "matched_fragments": 99, "total_fragments": 435, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Peptostreptococcales;f__Peptostreptococcaceae;g__Peptostreptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900240845.1", "gtdb_species": "s__Peptostreptococcus sp900240845", "ani": 77.4347, "matched_fragments": 128, "total_fragments": 435, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Peptostreptococcales;f__Peptostreptococcaceae;g__Peptostreptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_006861675.1", "gtdb_species": "s__Peptacetobacter hominis", "ani": 77.2064, "matched_fragments": 74, "total_fragments": 435, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Peptostreptococcales;f__Peptostreptococcaceae;g__Peptacetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000953675.1", "gtdb_species": "s__Paraclostridium sordellii", "ani": 76.7013, "matched_fragments": 80, "total_fragments": 435, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Peptostreptococcales;f__Peptostreptococcaceae;g__Paraclostridium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.12", "min_intra_species_ani": "96.78", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.89", "num_clustered_genomes": 59, "status": "-" }, { "accession": "GCF_000808015.1", "gtdb_species": "s__Terrisporobacter othiniensis", "ani": 76.3989, "matched_fragments": 72, "total_fragments": 435, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Peptostreptococcales;f__Peptostreptococcaceae;g__Terrisporobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.48", "min_intra_species_ani": "99.45", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.90", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_015668515.1", "gtdb_species": "s__Paraclostridium tenue", "ani": 76.3215, "matched_fragments": 78, "total_fragments": 435, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Peptostreptococcales;f__Peptostreptococcaceae;g__Paraclostridium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.58", "min_intra_species_ani": "97.73", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.87", "num_clustered_genomes": 8, "status": "-" }, { "accession": "GCF_900243075.1", "gtdb_species": "s__Clostridioides difficile_D", "ani": 76.2005, "matched_fragments": 89, "total_fragments": 435, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Peptostreptococcales;f__Peptostreptococcaceae;g__Clostridioides", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.09", "min_intra_species_ani": "99.09", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.92", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_002251085.2", "gtdb_species": "s__Romboutsia_B maritimum", "ani": 75.9756, "matched_fragments": 78, "total_fragments": 435, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Peptostreptococcales;f__Peptostreptococcaceae;g__Romboutsia_B", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.199, "cell_length": -0.199, "doubling_h": null, "growth_tmp": 37.0, "optimum_tmp": 37.0, "optimum_ph": 7.0, "genome_size": 2062805.666, "gc_content": 36.28, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": 1.0, "sporulation": 0.5, "motility": 0.0, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 1.0, "aerobic_respiration": 0.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 0.0, "coccus_cell_shape": 1.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_gtdb_taxon": [ "d__Bacteria", "p__Bacillota_A", "c__Clostridia", "o__Peptostreptococcales", "f__Peptostreptococcaceae", "g__Peptostreptococcus", "s__Peptostreptococcus sp020025095" ], "_genome_taxon": [ "Peptostreptococcus", "sp.", "d__Bacteria", "p__Bacillota_A", "c__Clostridia", "o__Peptostreptococcales", "f__Peptostreptococcaceae", "g__Peptostreptococcus", "s__Peptostreptococcus sp020025095", "Bacteria", "Bacillota", "A", "Clostridia", "Peptostreptococcales", "Peptostreptococcaceae", "Peptostreptococcus", "Peptostreptococcus", "sp020025095" ], "_meo": [ { "id": "MEO_0000054", "label": "feces" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }