{
    "type": "genome",
    "identifier": "GCA_020025935.1",
    "organism": "Shigella flexneri",
    "title": "Shigella flexneri",
    "description": "derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "Korea Polar Research Institute",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_020025935.1",
        "bioproject": "PRJNA665590",
        "biosample": "SAMN19315078",
        "wgs_master": "JAHHRE000000000.1",
        "refseq_category": "na",
        "taxid": "623",
        "species_taxid": "623",
        "organism_name": "Shigella flexneri",
        "infraspecific_name": "",
        "isolate": "MAG022",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2021/09/17",
        "asm_name": "ASM2002593v1",
        "submitter": "Korea Polar Research Institute",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/020/025/935/GCA_020025935.1_ASM2002593v1",
        "excluded_from_refseq": "derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2021-09-17",
    "dateModified": "2021-09-17",
    "datePublished": "2021-09-17",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Shigella flexneri"
        ],
        "sample_taxid": [
            "623"
        ],
        "sample_host_organism": [
            "Leptonychotes weddellii"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Antarctica: King George Island"
        ],
        "sample_host_location_id": [],
        "data_size": "1.296 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 95.83,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "4535755",
        "Number of Sequences": "112",
        "Longest Sequences (bp)": "191922",
        "N50 (bp)": "59903",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "50.8",
        "Number of CDSs": "4189",
        "Average Protein Length": "313.7",
        "Coding Ratio (%)": "86.9",
        "Number of rRNAs": "0",
        "Number of tRNAs": "53",
        "Number of CRISPRs": "3"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "species_taxid": 621,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 994,
                "total_fragments": 1452,
                "ani_threshold": 95,
                "status": "indistinguishable"
            },
            {
                "organism_name": "Shigella sonnei",
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                "accession": "GCA_002950395.1",
                "taxid": 624,
                "species_taxid": 624,
                "relation_to_type": "type",
                "validated": true,
                "ani": 98.3537,
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                "ani_threshold": 95,
                "status": "indistinguishable"
            },
            {
                "organism_name": "Shigella sonnei",
                "strain": "strain=NCTC12984",
                "accession": "GCA_900457155.1",
                "taxid": 624,
                "species_taxid": 624,
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                "validated": true,
                "ani": 98.2984,
                "matched_fragments": 1299,
                "total_fragments": 1452,
                "ani_threshold": 95,
                "status": "indistinguishable"
            },
            {
                "organism_name": "Shigella boydii",
                "strain": "strain=FDAARGOS_1139",
                "accession": "GCA_016726285.1",
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                "species_taxid": 621,
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                "validated": true,
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                "ani_threshold": 95,
                "status": "indistinguishable"
            },
            {
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                "accession": "GCA_900457095.1",
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                "relation_to_type": "type",
                "validated": true,
                "ani": 98.1627,
                "matched_fragments": 1202,
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                "ani_threshold": 95,
                "status": "indistinguishable"
            },
            {
                "organism_name": "Shigella flexneri 2a",
                "strain": "strain=ATCC 29903",
                "accession": "GCA_002950215.1",
                "taxid": 42897,
                "species_taxid": 623,
                "relation_to_type": "type",
                "validated": true,
                "ani": 97.9113,
                "matched_fragments": 1257,
                "total_fragments": 1452,
                "ani_threshold": 95,
                "status": "indistinguishable"
            },
            {
                "organism_name": "Shigella dysenteriae",
                "strain": "strain=ATCC 13313",
                "accession": "GCA_002949675.1",
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                "species_taxid": 622,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 97.1241,
                "matched_fragments": 1153,
                "total_fragments": 1452,
                "ani_threshold": 95,
                "status": "indistinguishable"
            },
            {
                "organism_name": "Shigella dysenteriae",
                "strain": "strain=NCTC4837",
                "accession": "GCA_900457215.1",
                "taxid": 622,
                "species_taxid": 622,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 97.0133,
                "matched_fragments": 1150,
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                "ani_threshold": 95,
                "status": "indistinguishable"
            },
            {
                "organism_name": "Escherichia coli",
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                "accession": "GCA_024519395.1",
                "taxid": 562,
                "species_taxid": 562,
                "relation_to_type": "neotype",
                "validated": true,
                "ani": 96.764,
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                "ani_threshold": 95,
                "status": "indistinguishable"
            },
            {
                "organism_name": "Escherichia coli",
                "strain": "strain=ATCC 11775",
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                "ani_threshold": 95,
                "status": "indistinguishable"
            },
            {
                "organism_name": "Escherichia coli",
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                "accession": "GCA_000690815.1",
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                "status": "indistinguishable"
            },
            {
                "organism_name": "Escherichia coli",
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                "accession": "GCA_000734955.1",
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                "matched_fragments": 1276,
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                "ani_threshold": 95,
                "status": "indistinguishable"
            },
            {
                "organism_name": "Escherichia albertii",
                "strain": "strain=NBRC 107761",
                "accession": "GCA_000759775.1",
                "taxid": 208962,
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                "relation_to_type": "type",
                "validated": true,
                "ani": 90.0868,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Escherichia albertii",
                "strain": "strain=DSM 17582",
                "accession": "GCA_022833075.1",
                "taxid": 208962,
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                "relation_to_type": "type",
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                "ani": 89.8676,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudocitrobacter corydidari",
                "strain": "",
                "accession": "GCA_021172065.1",
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                "species_taxid": 2891570,
                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
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            "contamination": 0.0,
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                "accession": "GCF_003697165.2",
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                "mean_intra_species_ani": "N/A",
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                "num_clustered_genomes": 1,
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        ]
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    "_bac2feature": {
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    "_genome_taxon": [
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        "p__Pseudomonadota",
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    ],
    "_meo": [
        {
            "id": "MEO_0000054",
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        }
    ],
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    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}