{ "type": "genome", "identifier": "GCA_020026055.1", "organism": "Actinobacillus sp.", "title": "Actinobacillus sp.", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "Korea Polar Research Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCA_020026055.1", "bioproject": "PRJNA665590", "biosample": "SAMN19315074", "wgs_master": "JAHHRA000000000.1", "refseq_category": "na", "taxid": "41114", "species_taxid": "41114", "organism_name": "Actinobacillus sp.", "infraspecific_name": "", "isolate": "MAG018", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/09/17", "asm_name": "ASM2002605v1", "submitter": "Korea Polar Research Institute", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/020/026/055/GCA_020026055.1_ASM2002605v1", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-09-17", "dateModified": "2021-09-17", "datePublished": "2021-09-17", "_annotation": { "sample_count": 1, "sample_organism": [ "Actinobacillus sp." ], "sample_taxid": [ "41114" ], "sample_host_organism": [ "Leptonychotes weddellii" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Antarctica: King George Island" ], "sample_host_location_id": [], "data_size": "0.446 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "1577594", "Number of Sequences": "35", "Longest Sequences (bp)": "124998", "N50 (bp)": "63708", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "36.4", "Number of CDSs": "1391", "Average Protein Length": "330.2", "Coding Ratio (%)": "87.3", "Number of rRNAs": "0", "Number of tRNAs": "31", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Avibacterium avium", "strain": "strain=NCTC 11297", "accession": "GCA_900454535.1", "taxid": 751, "species_taxid": 751, "relation_to_type": "type", "validated": true, "ani": 78.3128, "matched_fragments": 51, "total_fragments": 506, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pasteurella bettyae", "strain": "strain=NCTC10535", "accession": "GCA_900454515.1", "taxid": 752, "species_taxid": 752, "relation_to_type": "suspected-type", "validated": true, "ani": 77.8643, "matched_fragments": 73, "total_fragments": 506, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinobacillus seminis", "strain": "strain=NCTC10851", "accession": "GCA_900460625.1", "taxid": 722, "species_taxid": 722, "relation_to_type": "type", "validated": true, "ani": 77.8301, "matched_fragments": 50, "total_fragments": 506, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinobacillus seminis", "strain": "strain=ATCC 15768", "accession": "GCA_002263215.1", "taxid": 722, "species_taxid": 722, "relation_to_type": "type", "validated": true, "ani": 77.8301, "matched_fragments": 50, "total_fragments": 506, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Avibacterium volantium", "strain": "strain=NCTC3438", "accession": "GCA_900635775.1", "taxid": 762, "species_taxid": 762, "relation_to_type": "type", "validated": true, "ani": 77.8284, "matched_fragments": 61, "total_fragments": 506, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Avibacterium endocarditidis", "strain": "strain=20186H4H1", "accession": "GCA_002921145.1", "taxid": 380674, "species_taxid": 380674, "relation_to_type": "type", "validated": true, "ani": 77.7972, "matched_fragments": 57, "total_fragments": 506, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Avibacterium gallinarum", "strain": "strain=DSM 17481", "accession": "GCA_004362535.1", "taxid": 755, "species_taxid": 755, "relation_to_type": "type", "validated": true, "ani": 77.7945, "matched_fragments": 60, "total_fragments": 506, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pasteurella bettyae", "strain": "strain=CCUG 2042", "accession": "GCA_000262245.1", "taxid": 752, "species_taxid": 752, "relation_to_type": "suspected-type", "validated": true, "ani": 77.7801, "matched_fragments": 72, "total_fragments": 506, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Avibacterium gallinarum", "strain": "strain=NCTC11188", "accession": "GCA_900454485.1", "taxid": 755, "species_taxid": 755, "relation_to_type": "type", "validated": true, "ani": 77.7593, "matched_fragments": 60, "total_fragments": 506, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Avibacterium gallinarum", "strain": "strain=NCTC 11188", "accession": "GCA_002921135.1", "taxid": 755, "species_taxid": 755, "relation_to_type": "type", "validated": true, "ani": 77.7496, "matched_fragments": 60, "total_fragments": 506, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vespertiliibacter pulmonis", "strain": "strain=CCUG 64585", "accession": "GCA_013377275.1", "taxid": 1443036, "species_taxid": 1443036, "relation_to_type": "type", "validated": true, "ani": 77.6293, "matched_fragments": 54, "total_fragments": 506, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bisgaardia hudsonensis", "strain": "strain=M327/99/2", "accession": "GCA_013377195.1", "taxid": 109472, "species_taxid": 109472, "relation_to_type": "type", "validated": true, "ani": 77.5099, "matched_fragments": 82, "total_fragments": 506, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pasteurella dagmatis", "strain": "strain=NCTC11617", "accession": "GCA_900186835.1", "taxid": 754, "species_taxid": 754, "relation_to_type": "type", "validated": true, "ani": 77.506, "matched_fragments": 73, "total_fragments": 506, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bisgaardia hudsonensis", "strain": "strain=DSM 28231", "accession": "GCA_004345785.1", "taxid": 109472, "species_taxid": 109472, "relation_to_type": "type", "validated": true, "ani": 77.4577, "matched_fragments": 85, "total_fragments": 506, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pasteurella dagmatis", "strain": "strain=ATCC 43325", "accession": "GCA_000163475.1", "taxid": 754, "species_taxid": 754, "relation_to_type": "type", "validated": true, "ani": 77.4043, "matched_fragments": 74, "total_fragments": 506, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Conservatibacter flavescens", "strain": "strain=7.4", "accession": "GCA_002795425.1", "taxid": 28161, "species_taxid": 28161, "relation_to_type": "type", "validated": true, "ani": 77.3907, "matched_fragments": 59, "total_fragments": 506, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Haemophilus seminalis", "strain": "strain=SZY H1", "accession": "GCA_006384255.1", "taxid": 2582921, "species_taxid": 2582921, "relation_to_type": "type", "validated": true, "ani": 77.2685, "matched_fragments": 59, "total_fragments": 506, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Haemophilus haemolyticus", "strain": "strain=CCUG 12834", "accession": "GCA_001679045.1", "taxid": 726, "species_taxid": 726, "relation_to_type": "type", "validated": true, "ani": 77.2573, "matched_fragments": 57, "total_fragments": 506, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Haemophilus haemolyticus", "strain": "strain=ATCC 33390", "accession": "GCA_004368535.1", "taxid": 726, "species_taxid": 726, "relation_to_type": "type", "validated": true, "ani": 77.194, "matched_fragments": 61, "total_fragments": 506, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mannheimia pernigra", "strain": "strain=17CN0883", "accession": "GCA_013377995.1", "taxid": 111844, "species_taxid": 111844, "relation_to_type": "type", "validated": true, "ani": 77.0561, "matched_fragments": 52, "total_fragments": 506, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rodentibacter myodis", "strain": "strain=Ac151", "accession": "GCA_001999305.1", "taxid": 1907939, "species_taxid": 1907939, "relation_to_type": "type", "validated": true, "ani": 76.8785, "matched_fragments": 64, "total_fragments": 506, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lonepinella koalarum", "strain": "strain=ATCC 700131", "accession": "GCA_004565475.1", "taxid": 53417, "species_taxid": 53417, 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"matched_fragments": 206, "total_fragments": 506, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Actinobacillus_C", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900454535.1", "gtdb_species": "s__Avibacterium avium", "ani": 78.2377, "matched_fragments": 52, "total_fragments": 506, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Avibacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "95.69", "min_intra_species_ani": "95.67", "mean_intra_species_af": "0.83", "min_intra_species_af": "0.83", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_002263215.1", "gtdb_species": "s__Actinobacillus_B seminis", "ani": 77.8301, "matched_fragments": 50, 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