{
    "type": "genome",
    "identifier": "GCA_020047955.1",
    "organism": "Desulfocapsa sp.",
    "title": "Desulfocapsa sp.",
    "description": "derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "University of Michigan",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_020047955.1",
        "bioproject": "PRJNA72255",
        "biosample": "SAMN20441977",
        "wgs_master": "JAIFNB000000000.1",
        "refseq_category": "na",
        "taxid": "2066021",
        "species_taxid": "2066021",
        "organism_name": "Desulfocapsa sp.",
        "infraspecific_name": "",
        "isolate": "bin_61",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2021/09/20",
        "asm_name": "ASM2004795v1",
        "submitter": "University of Michigan",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/020/047/955/GCA_020047955.1_ASM2004795v1",
        "excluded_from_refseq": "derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2021-09-20",
    "dateModified": "2021-09-20",
    "datePublished": "2021-09-20",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Desulfocapsa sp."
        ],
        "sample_taxid": [
            "2066021"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "USA: northwestern Lake Huron"
        ],
        "sample_host_location_id": [],
        "data_size": "0.334 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 37.5,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "1160311",
        "Number of Sequences": "125",
        "Longest Sequences (bp)": "31453",
        "N50 (bp)": "9798",
        "Gap Ratio (%)": "0.000603",
        "GCcontent (%)": "50.2",
        "Number of CDSs": "909",
        "Average Protein Length": "317.6",
        "Coding Ratio (%)": "74.6",
        "Number of rRNAs": "0",
        "Number of tRNAs": "14",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [],
        "cc_result": {
            "completeness": 37.5,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_009773475.1",
                "gtdb_species": "s__UBA2270 sp009773475",
                "ani": 90.478,
                "matched_fragments": 260,
                "total_fragments": 321,
                "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Desulfobulbia;o__Desulfobulbales;f__Desulfocapsaceae;g__UBA2270",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_019163335.1",
                "gtdb_species": "s__UBA2270 sp019163335",
                "ani": 86.2353,
                "matched_fragments": 259,
                "total_fragments": 321,
                "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Desulfobulbia;o__Desulfobulbales;f__Desulfocapsaceae;g__UBA2270",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_013426795.1",
                "gtdb_species": "s__UBA2270 sp013426795",
                "ani": 84.3977,
                "matched_fragments": 210,
                "total_fragments": 321,
                "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Desulfobulbia;o__Desulfobulbales;f__Desulfocapsaceae;g__UBA2270",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_002347085.1",
                "gtdb_species": "s__UBA2270 sp002347085",
                "ani": 78.2605,
                "matched_fragments": 68,
                "total_fragments": 321,
                "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Desulfobulbia;o__Desulfobulbales;f__Desulfocapsaceae;g__UBA2270",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_013792135.1",
                "gtdb_species": "s__UBA2270 sp002347745",
                "ani": 77.6683,
                "matched_fragments": 127,
                "total_fragments": 321,
                "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Desulfobulbia;o__Desulfobulbales;f__Desulfocapsaceae;g__UBA2270",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.86",
                "min_intra_species_ani": "99.03",
                "mean_intra_species_af": "0.97",
                "min_intra_species_af": "0.82",
                "num_clustered_genomes": 13,
                "status": "-"
            },
            {
                "accession": "GCA_002424635.1",
                "gtdb_species": "s__UBA2270 sp002424635",
                "ani": 77.385,
                "matched_fragments": 72,
                "total_fragments": 321,
                "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Desulfobulbia;o__Desulfobulbales;f__Desulfocapsaceae;g__UBA2270",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.199,
        "cell_length": 0.301,
        "doubling_h": null,
        "growth_tmp": 27.5,
        "optimum_tmp": 30.0,
        "optimum_ph": 7.1,
        "genome_size": 3975466.25,
        "gc_content": 45.389,
        "coding_genes": 3518.0,
        "rRNA16S_genes": 3.0,
        "tRNA_genes": 46.0,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 1.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 1.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Desulfobacterota",
        "c__Desulfobulbia",
        "o__Desulfobulbales",
        "f__Desulfocapsaceae",
        "g__UBA2270",
        "s__"
    ],
    "_genome_taxon": [
        "Desulfocapsa",
        "sp.",
        "d__Bacteria",
        "p__Desulfobacterota",
        "c__Desulfobulbia",
        "o__Desulfobulbales",
        "f__Desulfocapsaceae",
        "g__UBA2270",
        "s__",
        "Bacteria",
        "Desulfobacterota",
        "Desulfobulbia",
        "Desulfobulbales",
        "Desulfocapsaceae",
        "UBA2270",
        "s",
        "",
        ""
    ],
    "_meo": [
        {
            "id": "MEO_0000116",
            "label": "biofilm"
        },
        {
            "id": "MEO_0000038",
            "label": "freshwater"
        }
    ],
    "quality": 2,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f"
}