{ "type": "genome", "identifier": "GCA_020048055.1", "organism": "Arcobacter sp.", "title": "Arcobacter sp.", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "University of Michigan", "publication": [ {} ], "properties": { "assembly_accession": "GCA_020048055.1", "bioproject": "PRJNA72255", "biosample": "SAMN20441976", "wgs_master": "JAIFNA000000000.1", "refseq_category": "na", "taxid": "1872629", "species_taxid": "1872629", "organism_name": "Arcobacter sp.", "infraspecific_name": "", "isolate": "Bin_6_9", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/09/20", "asm_name": "ASM2004805v1", "submitter": "University of Michigan", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/020/048/055/GCA_020048055.1_ASM2004805v1", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-09-20", "dateModified": "2021-09-20", "datePublished": "2021-09-20", "_annotation": { "sample_count": 1, "sample_organism": [ "Arcobacter sp." ], "sample_taxid": [ "1872629" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA: northwestern Lake Huron" ], "sample_host_location_id": [], "data_size": "0.548 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "1997449", "Number of Sequences": "18", "Longest Sequences (bp)": "279692", "N50 (bp)": "168327", "Gap Ratio (%)": "0.000851", "GCcontent (%)": "31.0", "Number of CDSs": "1988", "Average Protein Length": "301.2", "Coding Ratio (%)": "89.9", "Number of rRNAs": "0", "Number of tRNAs": "31", "Number of CRISPRs": "7" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Aliarcobacter butzleri", "strain": "strain=RM4018", "accession": "GCA_000014025.1", "taxid": 28197, "species_taxid": 28197, "relation_to_type": "type", "validated": true, "ani": 77.3734, "matched_fragments": 150, "total_fragments": 656, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aliarcobacter butzleri", "strain": "strain=NCTC 12481", "accession": "GCA_900187115.1", "taxid": 28197, "species_taxid": 28197, "relation_to_type": "type", "validated": true, "ani": 77.3574, "matched_fragments": 150, "total_fragments": 656, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aliarcobacter trophiarum", "strain": "strain=LMG 25534", "accession": "GCA_003355515.1", "taxid": 708186, "species_taxid": 708186, "relation_to_type": "type", "validated": true, "ani": 77.1098, "matched_fragments": 120, "total_fragments": 656, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aliarcobacter trophiarum", "strain": "strain=LMG 25534", "accession": "GCA_024584015.1", "taxid": 708186, "species_taxid": 708186, "relation_to_type": "type", "validated": true, "ani": 77.0538, "matched_fragments": 118, "total_fragments": 656, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "[Arcobacter] porcinus", "strain": "strain=LMG 24487", "accession": "GCA_024584075.1", "taxid": 1935204, "species_taxid": 1935204, "relation_to_type": "type", "validated": true, "ani": 77.0086, "matched_fragments": 132, "total_fragments": 656, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aliarcobacter cryaerophilus", "strain": "strain=LMG 9904", "accession": "GCA_006165035.1", "taxid": 28198, "species_taxid": 28198, "relation_to_type": 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"total_fragments": 656, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aliarcobacter skirrowii", "strain": "strain=CCUG 10374", "accession": "GCA_008802155.1", "taxid": 28200, "species_taxid": 28200, "relation_to_type": "type", "validated": true, "ani": 76.8759, "matched_fragments": 148, "total_fragments": 656, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aliarcobacter thereius", "strain": "strain=LMG 24486", "accession": "GCA_001695395.1", "taxid": 544718, "species_taxid": 544718, "relation_to_type": "type", "validated": true, "ani": 76.8749, "matched_fragments": 132, "total_fragments": 656, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aliarcobacter skirrowii", "strain": "strain=LMG 6621", "accession": "GCA_024584055.1", "taxid": 28200, "species_taxid": 28200, "relation_to_type": "type", "validated": true, "ani": 76.8715, "matched_fragments": 144, "total_fragments": 656, "ani_threshold": 95, "status": 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