{ "type": "genome", "identifier": "GCA_020048255.1", "organism": "Rhodoferax sp.", "title": "Rhodoferax sp.", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "University of Michigan", "publication": [ {} ], "properties": { "assembly_accession": "GCA_020048255.1", "bioproject": "PRJNA72255", "biosample": "SAMN20441967", "wgs_master": "JAIFMR000000000.1", "refseq_category": "na", "taxid": "50421", "species_taxid": "50421", "organism_name": "Rhodoferax sp.", "infraspecific_name": "", "isolate": "bin_44", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/09/20", "asm_name": "ASM2004825v1", "submitter": "University of Michigan", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/020/048/255/GCA_020048255.1_ASM2004825v1", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-09-20", "dateModified": "2021-09-20", "datePublished": "2021-09-20", "_annotation": { "sample_count": 1, "sample_organism": [ "Rhodoferax sp." ], "sample_taxid": [ "50421" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA: northwestern Lake Huron" ], "sample_host_location_id": [], "data_size": "0.657 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 35.23, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2317582", "Number of Sequences": "236", "Longest Sequences (bp)": "41870", "N50 (bp)": "10144", "Gap Ratio (%)": "0.007119", "GCcontent (%)": "58.0", "Number of CDSs": "1962", "Average Protein Length": "312.2", "Coding Ratio (%)": "79.3", "Number of rRNAs": "0", "Number of tRNAs": "14", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Rhodoferax fermentans", "strain": "strain=DSM 10138", "accession": "GCA_016583655.1", "taxid": 28066, "species_taxid": 28066, "relation_to_type": "type", "validated": true, "ani": 79.1448, "matched_fragments": 293, "total_fragments": 647, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodoferax fermentans", "strain": "strain=JCM 7819", "accession": "GCA_002017865.1", "taxid": 28066, "species_taxid": 28066, "relation_to_type": "type", "validated": true, "ani": 79.126, "matched_fragments": 294, "total_fragments": 647, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodoferax antarcticus", "strain": "strain=DSM 24876", "accession": "GCA_001955735.1", "taxid": 81479, "species_taxid": 81479, "relation_to_type": 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"below_threshold" }, { "organism_name": "Simplicispira metamorpha", "strain": "strain=NBRC 13960", "accession": "GCA_003568725.1", "taxid": 80881, "species_taxid": 80881, "relation_to_type": "type", "validated": true, "ani": 77.2915, "matched_fragments": 143, "total_fragments": 647, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 35.23, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_002083775.1", "gtdb_species": "s__Rhodoferax ferrireducens_A", "ani": 79.7823, "matched_fragments": 348, "total_fragments": 647, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Rhodoferax", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_013416775.1", "gtdb_species": "s__Rhodoferax 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