{
    "type": "genome",
    "identifier": "GCA_020048295.1",
    "organism": "Rhodoferax sp.",
    "title": "Rhodoferax sp.",
    "description": "derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "University of Michigan",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_020048295.1",
        "bioproject": "PRJNA72255",
        "biosample": "SAMN20441969",
        "wgs_master": "JAIFMT000000000.1",
        "refseq_category": "na",
        "taxid": "50421",
        "species_taxid": "50421",
        "organism_name": "Rhodoferax sp.",
        "infraspecific_name": "",
        "isolate": "bin_46",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2021/09/20",
        "asm_name": "ASM2004829v1",
        "submitter": "University of Michigan",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/020/048/295/GCA_020048295.1_ASM2004829v1",
        "excluded_from_refseq": "derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2021-09-20",
    "dateModified": "2021-09-20",
    "datePublished": "2021-09-20",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Rhodoferax sp."
        ],
        "sample_taxid": [
            "50421"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "USA: northwestern Lake Huron"
        ],
        "sample_host_location_id": [],
        "data_size": "0.764 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 32.77,
        "contamination": 4.17,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "2729705",
        "Number of Sequences": "261",
        "Longest Sequences (bp)": "44734",
        "N50 (bp)": "11196",
        "Gap Ratio (%)": "0.002454",
        "GCcontent (%)": "60.5",
        "Number of CDSs": "2291",
        "Average Protein Length": "319.3",
        "Coding Ratio (%)": "80.4",
        "Number of rRNAs": "0",
        "Number of tRNAs": "21",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "relation_to_type": "type",
                "validated": true,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Rhodoferax antarcticus",
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                "accession": "GCA_001955735.1",
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                "validated": true,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Rhodoferax fermentans",
                "strain": "strain=JCM 7819",
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                "species_taxid": 28066,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Rhodoferax fermentans",
                "strain": "strain=DSM 10138",
                "accession": "GCA_016583655.1",
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                "species_taxid": 28066,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.7158,
                "matched_fragments": 347,
                "total_fragments": 777,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Rhodoferax lacus",
                "strain": "strain=IMCC26218",
                "accession": "GCA_003415675.1",
                "taxid": 2184758,
                "species_taxid": 2184758,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.6306,
                "matched_fragments": 269,
                "total_fragments": 777,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Acidovorax kalamii",
                "strain": "strain=KNDSW-TSA6",
                "accession": "GCA_002245625.1",
                "taxid": 2004485,
                "species_taxid": 2004485,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.2028,
                "matched_fragments": 223,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Acidovorax carolinensis",
                "strain": "strain=NA3",
                "accession": "GCA_002157145.1",
                "taxid": 553814,
                "species_taxid": 553814,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.2023,
                "matched_fragments": 215,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Hydrogenophaga borbori",
                "strain": "strain=LA-38",
                "accession": "GCA_003417535.1",
                "taxid": 2294117,
                "species_taxid": 2294117,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.5177,
                "matched_fragments": 185,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Limnohabitans curvus",
                "strain": "strain=MWH-C5",
                "accession": "GCA_003063475.1",
                "taxid": 323423,
                "species_taxid": 323423,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.3695,
                "matched_fragments": 100,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Inhella crocodyli",
                "strain": "strain=CCP-18",
                "accession": "GCA_004004565.1",
                "taxid": 2499851,
                "species_taxid": 2499851,
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                "validated": true,
                "ani": 76.2753,
                "matched_fragments": 105,
                "total_fragments": 777,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
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            "contamination": 4.17,
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        "gtdb_result": [
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                "accession": "GCA_903873485.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Rhodoferax",
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                "min_intra_species_ani": "99.21",
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                "num_clustered_genomes": 6,
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            {
                "accession": "GCA_002083775.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Rhodoferax",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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            },
            {
                "accession": "GCA_903905735.1",
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                "mean_intra_species_ani": "N/A",
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            },
            {
                "accession": "GCA_018063565.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Rhodoferax",
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                "mean_intra_species_ani": "N/A",
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            },
            {
                "accession": "GCA_016719055.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Rhodoferax",
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                "num_clustered_genomes": 1,
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            },
            {
                "accession": "GCA_002842265.1",
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            },
            {
                "accession": "GCF_013416775.1",
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            {
                "accession": "GCA_008080595.1",
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            {
                "accession": "GCF_002157145.1",
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            {
                "accession": "GCA_018241405.1",
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        ]
    },
    "_bac2feature": {
        "phenotypes": null,
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    "_gtdb_taxon": [
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    "_genome_taxon": [
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        "s__Rhodoferax sp020048295",
        "Bacteria",
        "Pseudomonadota",
        "Gammaproteobacteria",
        "Burkholderiales",
        "Burkholderiaceae",
        "Rhodoferax",
        "Rhodoferax",
        "sp020048295"
    ],
    "_meo": [
        {
            "id": "MEO_0000116",
            "label": "biofilm"
        },
        {
            "id": "MEO_0000038",
            "label": "freshwater"
        }
    ],
    "quality": 2,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f"
}