{ "type": "genome", "identifier": "GCA_020048955.1", "organism": "Flavobacterium sp.", "title": "Flavobacterium sp.", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "University of Michigan", "publication": [ {} ], "properties": { "assembly_accession": "GCA_020048955.1", "bioproject": "PRJNA72255", "biosample": "SAMN20441943", "wgs_master": "JAIFLT000000000.1", "refseq_category": "na", "taxid": "239", "species_taxid": "239", "organism_name": "Flavobacterium sp.", "infraspecific_name": "", "isolate": "bin_227", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/09/20", "asm_name": "ASM2004895v1", "submitter": "University of Michigan", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/020/048/955/GCA_020048955.1_ASM2004895v1", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-09-20", "dateModified": "2021-09-20", "datePublished": "2021-09-20", "_annotation": { "sample_count": 1, "sample_organism": [ "Flavobacterium sp." ], "sample_taxid": [ "239" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA: northwestern Lake Huron" ], "sample_host_location_id": [], "data_size": "0.811 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 93.18, "contamination": 0.46, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2930134", "Number of Sequences": "211", "Longest Sequences (bp)": "54527", "N50 (bp)": "16927", "Gap Ratio (%)": 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"species_taxid": 245, "relation_to_type": "type", "validated": true, "ani": 81.9107, "matched_fragments": 474, "total_fragments": 866, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium dankookense", "strain": "strain=DSM 25687", "accession": "GCA_004362665.1", "taxid": 706186, "species_taxid": 706186, "relation_to_type": "type", "validated": true, "ani": 79.4659, "matched_fragments": 380, "total_fragments": 866, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium macrobrachii", "strain": "strain=LMG 25203", "accession": "GCA_014385475.2", "taxid": 591204, "species_taxid": 591204, "relation_to_type": "type", "validated": true, "ani": 79.3802, "matched_fragments": 378, "total_fragments": 866, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium macrobrachii", "strain": "strain=an-8", "accession": "GCA_014486675.1", "taxid": 591204, "species_taxid": 591204, "relation_to_type": "type", "validated": true, "ani": 79.3475, "matched_fragments": 383, "total_fragments": 866, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium solisilvae", "strain": "strain=SE-s27", "accession": "GCA_012911605.1", "taxid": 1852019, "species_taxid": 1852019, "relation_to_type": "type", "validated": true, "ani": 79.2691, "matched_fragments": 365, "total_fragments": 866, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium lutivivi", "strain": "strain=CGMCC 1.15347", "accession": "GCA_014642275.1", "taxid": 1677894, "species_taxid": 1677894, "relation_to_type": "type", "validated": true, "ani": 78.5052, "matched_fragments": 296, "total_fragments": 866, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium cyclinae", "strain": "strain=KSM-R2A25", "accession": "GCA_021172145.1", "taxid": 2895947, "species_taxid": 2895947, "relation_to_type": "type", "validated": true, "ani": 78.0267, "matched_fragments": 234, "total_fragments": 866, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium proteolyticum", "strain": "strain=1Y8A", "accession": "GCA_015223105.1", "taxid": 2911683, "species_taxid": 2911683, "relation_to_type": "type", "validated": true, "ani": 77.8071, "matched_fragments": 250, "total_fragments": 866, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium channae", "strain": "strain=KSM-R2A30", "accession": "GCA_021172165.1", "taxid": 2897181, "species_taxid": 2897181, "relation_to_type": "type", "validated": true, "ani": 77.6077, "matched_fragments": 244, "total_fragments": 866, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium luteum", "strain": "strain=NBRC 112527", "accession": "GCA_008806775.1", "taxid": 2026654, "species_taxid": 2026654, "relation_to_type": "type", "validated": true, "ani": 77.5301, "matched_fragments": 234, "total_fragments": 866, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium soyae", "strain": "strain=SCIV07", "accession": "GCA_021245985.1", "taxid": 2903098, "species_taxid": 2903098, "relation_to_type": "type", "validated": true, "ani": 77.127, "matched_fragments": 207, "total_fragments": 866, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium succinicans", "strain": "strain=DSM 4002", "accession": "GCA_900114945.1", "taxid": 29536, "species_taxid": 29536, "relation_to_type": "type", "validated": true, "ani": 77.1174, "matched_fragments": 183, "total_fragments": 866, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium sediminilitoris", "strain": "strain=YSM-43", "accession": "GCA_023008245.1", "taxid": 2024526, "species_taxid": 2024526, "relation_to_type": "type", "validated": true, "ani": 77.0168, "matched_fragments": 220, "total_fragments": 866, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium cellulosilyticum", "strain": "strain=AR-3-4", "accession": "GCA_004349355.1", "taxid": 2541731, "species_taxid": 2541731, "relation_to_type": "type", "validated": true, "ani": 76.8168, "matched_fragments": 213, "total_fragments": 866, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 93.18, "contamination": 0.46, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_013298525.1", "gtdb_species": "s__Flavobacterium sp013298525", "ani": 88.5385, "matched_fragments": 541, "total_fragments": 866, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_001464475.1", "gtdb_species": "s__Flavobacterium sp001464475", "ani": 88.532, "matched_fragments": 640, "total_fragments": 866, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000757385.1", "gtdb_species": "s__Flavobacterium aquatile", "ani": 81.9618, "matched_fragments": 487, "total_fragments": 866, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "99.99", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_003525665.1", "gtdb_species": "s__Flavobacterium sp003525665", "ani": 81.8514, "matched_fragments": 482, 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