{
    "type": "genome",
    "identifier": "GCA_020049975.1",
    "organism": "Pseudomonadales bacterium",
    "title": "Pseudomonadales bacterium",
    "description": "derived from metagenome; genus undefined",
    "data type": "Genome sequencing and assembly",
    "organization": "Northwestern University",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_020049975.1",
        "bioproject": "PRJNA563685",
        "biosample": "SAMN18076888",
        "wgs_master": "JAGVLD000000000.1",
        "refseq_category": "na",
        "taxid": "1891229",
        "species_taxid": "1891229",
        "organism_name": "Pseudomonadales bacterium",
        "infraspecific_name": "",
        "isolate": "SW_72",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2021/09/20",
        "asm_name": "ASM2004997v1",
        "submitter": "Northwestern University",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/020/049/975/GCA_020049975.1_ASM2004997v1",
        "excluded_from_refseq": "derived from metagenome; genus undefined",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2021-09-20",
    "dateModified": "2021-09-20",
    "datePublished": "2021-09-20",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Pseudomonadales bacterium"
        ],
        "sample_taxid": [
            "1891229"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "USA: Sanford Underground Research Facility, Lead SD, Deep Mine Microbial Observatory (DeMMO)"
        ],
        "sample_host_location_id": [],
        "data_size": "0.803 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 35.42,
        "contamination": 4.17,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "2837070",
        "Number of Sequences": "502",
        "Longest Sequences (bp)": "51936",
        "N50 (bp)": "6179",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "63.5",
        "Number of CDSs": "2181",
        "Average Protein Length": "293.2",
        "Coding Ratio (%)": "67.6",
        "Number of rRNAs": "1",
        "Number of tRNAs": "27",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Cupriavidus malaysiensis",
                "strain": "strain=USMAA1020",
                "accession": "GCA_001854325.1",
                "taxid": 367825,
                "species_taxid": 367825,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.5632,
                "matched_fragments": 58,
                "total_fragments": 700,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 35.42,
            "contamination": 4.17,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_016708925.1",
                "gtdb_species": "s__JAGPUQ01 sp016708925",
                "ani": 88.0364,
                "matched_fragments": 105,
                "total_fragments": 700,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Porticoccaceae;g__JAGPUQ01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.16",
                "min_intra_species_ani": "98.04",
                "mean_intra_species_af": "0.89",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_016191205.1",
                "gtdb_species": "s__JAGPUQ01 sp016191205",
                "ani": 86.7337,
                "matched_fragments": 94,
                "total_fragments": 700,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Porticoccaceae;g__JAGPUQ01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_001464695.1",
                "gtdb_species": "s__Ga0077523 sp001464695",
                "ani": 82.7853,
                "matched_fragments": 80,
                "total_fragments": 700,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Ga0077523;g__Ga0077523",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_002737365.1",
                "gtdb_species": "s__12-FULL-67-14b sp002737365",
                "ani": 79.2288,
                "matched_fragments": 51,
                "total_fragments": 700,
                "gtdb_taxonomy": "d__Bacteria;p__Acidobacteriota;c__Vicinamibacteria;o__Vicinamibacterales;f__UBA2999;g__12-FULL-67-14b",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.27",
                "min_intra_species_ani": "96.58",
                "mean_intra_species_af": "0.83",
                "min_intra_species_af": "0.80",
                "num_clustered_genomes": 6,
                "status": "-"
            },
            {
                "accession": "GCA_009694735.1",
                "gtdb_species": "s__12-FULL-67-14b sp009694735",
                "ani": 78.7232,
                "matched_fragments": 53,
                "total_fragments": 700,
                "gtdb_taxonomy": "d__Bacteria;p__Acidobacteriota;c__Vicinamibacteria;o__Vicinamibacterales;f__UBA2999;g__12-FULL-67-14b",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_001768615.1",
                "gtdb_species": "s__12-FULL-67-14b sp001768615",
                "ani": 77.9498,
                "matched_fragments": 67,
                "total_fragments": 700,
                "gtdb_taxonomy": "d__Bacteria;p__Acidobacteriota;c__Vicinamibacteria;o__Vicinamibacterales;f__UBA2999;g__12-FULL-67-14b",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001854325.1",
                "gtdb_species": "s__Cupriavidus malaysiensis",
                "ani": 75.5632,
                "matched_fragments": 58,
                "total_fragments": 700,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Cupriavidus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.34",
                "min_intra_species_ani": "99.30",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.91",
                "num_clustered_genomes": 3,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.159,
        "cell_length": 0.181,
        "doubling_h": 0.003,
        "growth_tmp": 28.99,
        "optimum_tmp": 28.439,
        "optimum_ph": 7.223,
        "genome_size": 4973266.217,
        "gc_content": 54.575,
        "coding_genes": 4450.277,
        "rRNA16S_genes": 5.452,
        "tRNA_genes": 67.069,
        "gram_stain": 0.0,
        "sporulation": 0.007,
        "motility": 0.593,
        "range_salinity": 0.666,
        "facultative_respiration": 0.024,
        "anaerobic_respiration": 0.004,
        "aerobic_respiration": 0.971,
        "mesophilic_range_tmp": 0.92,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.079,
        "bacillus_cell_shape": 0.791,
        "coccus_cell_shape": 0.097,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.111,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Pseudomonadota",
        "c__Gammaproteobacteria",
        "o__Pseudomonadales",
        "f__Porticoccaceae",
        "g__JAGPUQ01",
        "s__"
    ],
    "_genome_taxon": [
        "Pseudomonadales",
        "bacterium",
        "d__Bacteria",
        "p__Pseudomonadota",
        "c__Gammaproteobacteria",
        "o__Pseudomonadales",
        "f__Porticoccaceae",
        "g__JAGPUQ01",
        "s__",
        "Bacteria",
        "Pseudomonadota",
        "Gammaproteobacteria",
        "Pseudomonadales",
        "Porticoccaceae",
        "JAGPUQ01",
        "s",
        "",
        ""
    ],
    "_meo": [
        {
            "id": "MEO_0000731",
            "label": "drain water"
        }
    ],
    "quality": 2,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f"
}