{ "type": "genome", "identifier": "GCA_020050245.1", "organism": "Legionella sp.", "title": "Legionella sp.", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "Northwestern University", "publication": [ {} ], "properties": { "assembly_accession": "GCA_020050245.1", "bioproject": "PRJNA563685", "biosample": "SAMN18076881", "wgs_master": "JAGVKW000000000.1", "refseq_category": "na", "taxid": "459", "species_taxid": "459", "organism_name": "Legionella sp.", "infraspecific_name": "", "isolate": "SW_39", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/09/20", "asm_name": "ASM2005024v1", "submitter": "Northwestern University", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/020/050/245/GCA_020050245.1_ASM2005024v1", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-09-20", "dateModified": "2021-09-20", "datePublished": "2021-09-20", "_annotation": { "sample_count": 1, "sample_organism": [ "Legionella sp." ], "sample_taxid": [ "459" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA: Sanford Underground Research Facility, Lead SD, Deep Mine Microbial Observatory (DeMMO)" ], "sample_host_location_id": [], "data_size": "0.541 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 56.77, "contamination": 4.17, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "1883653", "Number of Sequences": "130", "Longest Sequences (bp)": "78742", "N50 (bp)": "19644", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "40.8", "Number of CDSs": "1525", "Average Protein Length": "346.4", "Coding Ratio (%)": "84.1", "Number of rRNAs": "0", "Number of tRNAs": "19", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Legionella worsleiensis", "strain": "strain=NCTC12377", "accession": "GCA_900453045.1", "taxid": 45076, "species_taxid": 45076, "relation_to_type": "type", "validated": true, "ani": 77.1967, "matched_fragments": 61, "total_fragments": 569, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Legionella worsleiensis", "strain": "strain=ATCC 49508", "accession": "GCA_001467535.1", "taxid": 45076, "species_taxid": 45076, "relation_to_type": "type", "validated": true, "ani": 77.1321, "matched_fragments": 62, "total_fragments": 569, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Legionella bononiensis", "strain": "strain=30cs62", "accession": "GCA_016786415.1", "taxid": 2793102, "species_taxid": 2793102, "relation_to_type": "type", "validated": true, "ani": 77.1046, "matched_fragments": 73, "total_fragments": 569, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Legionella quateirensis", "strain": "strain=NCTC12376", "accession": "GCA_900452695.1", "taxid": 45072, "species_taxid": 45072, "relation_to_type": "type", "validated": true, "ani": 77.0273, "matched_fragments": 73, "total_fragments": 569, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Legionella quateirensis", "strain": "strain=ATCC 49507", "accession": "GCA_001467955.1", "taxid": 45072, "species_taxid": 45072, "relation_to_type": "type", "validated": true, "ani": 77.0266, "matched_fragments": 73, "total_fragments": 569, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Legionella fallonii", "strain": "strain=LLAP-10", "accession": "GCA_000953135.1", "taxid": 96230, "species_taxid": 96230, "relation_to_type": "type", "validated": true, "ani": 76.9485, "matched_fragments": 68, "total_fragments": 569, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Legionella drancourtii", "strain": "strain=LLAP12", "accession": "GCA_000162755.2", "taxid": 168933, "species_taxid": 168933, "relation_to_type": "type", "validated": true, "ani": 76.6628, "matched_fragments": 55, "total_fragments": 569, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Legionella sainthelensi", "strain": "strain=MSH-4", "accession": "GCA_900640185.1", "taxid": 28087, "species_taxid": 28087, "relation_to_type": "type", "validated": true, "ani": 76.6241, "matched_fragments": 56, "total_fragments": 569, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Legionella anisa", "strain": "strain=FDAARGOS_1480", "accession": "GCA_019930885.1", "taxid": 28082, "species_taxid": 28082, "relation_to_type": "type", "validated": true, "ani": 76.5947, "matched_fragments": 53, "total_fragments": 569, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Legionella sainthelensi", "strain": "strain=Mt.St.Helens-4", "accession": "GCA_001468105.1", "taxid": 28087, "species_taxid": 28087, "relation_to_type": "type", "validated": true, "ani": 76.5939, "matched_fragments": 54, "total_fragments": 569, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Legionella anisa", "strain": "strain=WA-316-C3", "accession": "GCA_900639785.1", "taxid": 28082, "species_taxid": 28082, "relation_to_type": "type", "validated": true, "ani": 76.5686, "matched_fragments": 52, "total_fragments": 569, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Legionella bozemanae", "strain": "strain=WIGA", "accession": "GCA_001467045.1", "taxid": 447, "species_taxid": 447, "relation_to_type": "type", "validated": true, "ani": 76.5182, "matched_fragments": 51, "total_fragments": 569, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Legionella anisa", "strain": "strain=WA-316-C3", "accession": "GCA_001467525.1", "taxid": 28082, "species_taxid": 28082, "relation_to_type": "type", "validated": true, "ani": 76.5103, "matched_fragments": 54, "total_fragments": 569, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Legionella bozemanae", "strain": "strain=WIGA", "accession": "GCA_900640135.1", "taxid": 447, "species_taxid": 447, "relation_to_type": "type", "validated": true, "ani": 76.486, "matched_fragments": 53, "total_fragments": 569, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Legionella rowbothamii", "strain": "strain=LLAP6", "accession": "GCA_900639985.1", "taxid": 96229, "species_taxid": 96229, "relation_to_type": "type", "validated": true, "ani": 76.1218, "matched_fragments": 57, "total_fragments": 569, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 56.77, "contamination": 4.17, "strain_heterogeneity": 0.0 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