{ "type": "genome", "identifier": "GCA_020050595.1", "organism": "Legionellales bacterium", "title": "Legionellales bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "Northwestern University", "publication": [ {} ], "properties": { "assembly_accession": "GCA_020050595.1", "bioproject": "PRJNA563685", "biosample": "SAMN18076870", "wgs_master": "JAGVKL000000000.1", "refseq_category": "na", "taxid": "2026754", "species_taxid": "2026754", "organism_name": "Legionellales bacterium", "infraspecific_name": "", "isolate": "SW_27", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/09/20", "asm_name": "ASM2005059v1", "submitter": "Northwestern University", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/020/050/595/GCA_020050595.1_ASM2005059v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-09-20", "dateModified": "2021-09-20", "datePublished": "2021-09-20", "_annotation": { "sample_count": 1, "sample_organism": [ "Legionellales bacterium" ], "sample_taxid": [ "2026754" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA: Sanford Underground Research Facility, Lead SD, Deep Mine Microbial Observatory (DeMMO)" ], "sample_host_location_id": [], "data_size": "0.494 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 75.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "1722929", "Number of Sequences": "75", "Longest Sequences (bp)": "69307", "N50 (bp)": "30871", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "41.8", "Number of CDSs": "1448", "Average Protein Length": "345.7", "Coding Ratio (%)": "87.2", "Number of rRNAs": "0", "Number of tRNAs": "26", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Legionella moravica", "strain": "strain=NCTC12239", "accession": "GCA_900452715.1", "taxid": 39962, "species_taxid": 39962, "relation_to_type": "type", "validated": true, "ani": 78.9095, "matched_fragments": 53, "total_fragments": 540, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Legionella moravica", "strain": "strain=ATCC 43877", "accession": "GCA_001467865.1", "taxid": 39962, "species_taxid": 39962, "relation_to_type": "type", "validated": true, "ani": 78.8158, "matched_fragments": 53, "total_fragments": 540, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Legionella moravica", "strain": "strain=DSM 19234", "accession": "GCA_000423305.1", "taxid": 39962, "species_taxid": 39962, "relation_to_type": "type", "validated": true, "ani": 78.7174, "matched_fragments": 52, "total_fragments": 540, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Legionella steelei", "strain": "strain=IMVS3376", "accession": "GCA_001468005.1", "taxid": 947033, "species_taxid": 947033, "relation_to_type": "type", "validated": true, "ani": 77.3746, "matched_fragments": 60, "total_fragments": 540, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Legionella parisiensis", "strain": "strain=PF-209-C-C2", "accession": "GCA_001467945.1", "taxid": 45071, "species_taxid": 45071, "relation_to_type": "type", "validated": true, "ani": 76.9667, "matched_fragments": 56, "total_fragments": 540, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Legionella nautarum", "strain": "strain=ATCC 49506", "accession": "GCA_001467895.1", "taxid": 45070, "species_taxid": 45070, "relation_to_type": "type", "validated": true, "ani": 76.9295, "matched_fragments": 66, "total_fragments": 540, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Legionella parisiensis", "strain": "strain=DSM 19216", "accession": "GCA_001736145.1", "taxid": 45071, "species_taxid": 45071, "relation_to_type": "type", "validated": true, "ani": 76.8345, "matched_fragments": 57, "total_fragments": 540, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Legionella cincinnatiensis", "strain": "strain=NCTC12438", "accession": "GCA_900452415.1", "taxid": 28085, "species_taxid": 28085, "relation_to_type": "type", "validated": true, "ani": 76.8223, "matched_fragments": 50, "total_fragments": 540, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Legionella nautarum", "strain": "strain=1224", "accession": "GCA_900639935.1", "taxid": 45070, "species_taxid": 45070, "relation_to_type": "type", "validated": true, "ani": 76.8096, "matched_fragments": 66, "total_fragments": 540, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Legionella nagasakiensis", "strain": "strain=JCM 15315", "accession": "GCA_900639915.1", "taxid": 535290, "species_taxid": 535290, "relation_to_type": "type", "validated": true, "ani": 76.5842, "matched_fragments": 64, "total_fragments": 540, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Legionella maceachernii", "strain": "strain=NCTC11982", "accession": "GCA_900460175.1", "taxid": 466, "species_taxid": 466, "relation_to_type": "type", "validated": true, "ani": 76.3092, "matched_fragments": 54, "total_fragments": 540, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Legionella maceachernii", "strain": "strain=ATCC 35300", "accession": "GCA_900167045.1", "taxid": 466, "species_taxid": 466, "relation_to_type": "type", "validated": true, "ani": 76.3077, "matched_fragments": 54, "total_fragments": 540, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Legionella maceachernii", "strain": "strain=PX-1-G2-E2", "accession": "GCA_001467845.1", "taxid": 466, "species_taxid": 466, "relation_to_type": "type", "validated": true, "ani": 76.2991, "matched_fragments": 53, "total_fragments": 540, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Legionella longbeachae", "strain": "strain=FDAARGOS_1481", "accession": "GCA_019930685.1", "taxid": 450, "species_taxid": 450, "relation_to_type": "type", "validated": true, "ani": 76.2115, "matched_fragments": 55, "total_fragments": 540, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 75.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000423305.1", "gtdb_species": "s__Legionella moravica", "ani": 78.6457, "matched_fragments": 53, "total_fragments": 540, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Legionellales;f__Legionellaceae;g__Legionella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.09", "min_intra_species_ani": "96.46", "mean_intra_species_af": "0.96", "min_intra_species_af": "0.86", "num_clustered_genomes": 5, "status": "-" }, { "accession": "GCF_003989735.1", "gtdb_species": "s__Legionella sp003989735", "ani": 77.3867, "matched_fragments": 52, "total_fragments": 540, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Legionellales;f__Legionellaceae;g__Legionella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001468005.1", "gtdb_species": "s__Legionella steelei", "ani": 77.3746, "matched_fragments": 60, "total_fragments": 540, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Legionellales;f__Legionellaceae;g__Legionella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.95", "min_intra_species_ani": "98.94", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.93", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_002352055.1", "gtdb_species": "s__Legionella sp002352055", "ani": 77.1814, "matched_fragments": 54, "total_fragments": 540, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Legionellales;f__Legionellaceae;g__Legionella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001467945.1", "gtdb_species": "s__Legionella parisiensis", "ani": 76.9667, "matched_fragments": 56, "total_fragments": 540, "gtdb_taxonomy": 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