{
    "type": "genome",
    "identifier": "GCA_020052295.1",
    "organism": "Deltaproteobacteria bacterium",
    "title": "Deltaproteobacteria bacterium",
    "description": "derived from metagenome; genus undefined",
    "data type": "Genome sequencing and assembly",
    "organization": "Northwestern University",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_020052295.1",
        "bioproject": "PRJNA563685",
        "biosample": "SAMN18076998",
        "wgs_master": "JAGVPJ000000000.1",
        "refseq_category": "na",
        "taxid": "2026735",
        "species_taxid": "2026735",
        "organism_name": "Deltaproteobacteria bacterium",
        "infraspecific_name": "",
        "isolate": "DeMMO3_86",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2021/09/20",
        "asm_name": "ASM2005229v1",
        "submitter": "Northwestern University",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/020/052/295/GCA_020052295.1_ASM2005229v1",
        "excluded_from_refseq": "derived from metagenome; genus undefined",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2021-09-20",
    "dateModified": "2021-09-20",
    "datePublished": "2021-09-20",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Deltaproteobacteria bacterium"
        ],
        "sample_taxid": [
            "2026735"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "USA: Sanford Underground Research Facility, Lead SD, Deep Mine Microbial Observatory (DeMMO)"
        ],
        "sample_host_location_id": [],
        "data_size": "0.296 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 20.83,
        "contamination": 4.17,
        "strain_heterogeneity": 100.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "1047239",
        "Number of Sequences": "77",
        "Longest Sequences (bp)": "124390",
        "N50 (bp)": "35578",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "60.1",
        "Number of CDSs": "875",
        "Average Protein Length": "318.7",
        "Coding Ratio (%)": "79.9",
        "Number of rRNAs": "0",
        "Number of tRNAs": "5",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Desulfobulbus elongatus",
                "strain": "strain=DSM 2908",
                "accession": "GCA_000621145.1",
                "taxid": 53332,
                "species_taxid": 53332,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.8739,
                "matched_fragments": 76,
                "total_fragments": 313,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Desulfobulbus propionicus",
                "strain": "strain=DSM 2032",
                "accession": "GCA_000186885.1",
                "taxid": 894,
                "species_taxid": 894,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.3919,
                "matched_fragments": 51,
                "total_fragments": 313,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Desulfogranum mediterraneum",
                "strain": "strain=DSM 13871",
                "accession": "GCA_000429965.1",
                "taxid": 160661,
                "species_taxid": 160661,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.288,
                "matched_fragments": 54,
                "total_fragments": 313,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 20.83,
            "contamination": 4.17,
            "strain_heterogeneity": 100.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_003508005.1",
                "gtdb_species": "s__UBA10518 sp003508005",
                "ani": 86.1863,
                "matched_fragments": 214,
                "total_fragments": 313,
                "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Desulfobulbia;o__Desulfobulbales;f__Desulfobulbaceae;g__UBA10518",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_003604995.1",
                "gtdb_species": "s__UBA10518 sp003604995",
                "ani": 84.7418,
                "matched_fragments": 181,
                "total_fragments": 313,
                "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Desulfobulbia;o__Desulfobulbales;f__Desulfobulbaceae;g__UBA10518",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_011372855.1",
                "gtdb_species": "s__UBA10518 sp011372855",
                "ani": 78.3312,
                "matched_fragments": 110,
                "total_fragments": 313,
                "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Desulfobulbia;o__Desulfobulbales;f__Desulfobulbaceae;g__UBA10518",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_002897615.1",
                "gtdb_species": "s__BMS3Abin13 sp002897615",
                "ani": 78.0789,
                "matched_fragments": 61,
                "total_fragments": 313,
                "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Desulfobulbia;o__Desulfobulbales;f__Desulfobulbaceae;g__BMS3Abin13",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.72",
                "min_intra_species_ani": "95.88",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.92",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_000621145.1",
                "gtdb_species": "s__Desulfobulbus elongatus",
                "ani": 77.8739,
                "matched_fragments": 76,
                "total_fragments": 313,
                "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Desulfobulbia;o__Desulfobulbales;f__Desulfobulbaceae;g__Desulfobulbus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_015484845.1",
                "gtdb_species": "s__DRKI01 sp015484845",
                "ani": 77.8267,
                "matched_fragments": 92,
                "total_fragments": 313,
                "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Desulfobulbia;o__Desulfobulbales;f__Desulfobulbaceae;g__DRKI01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_013151365.1",
                "gtdb_species": "s__BMS3Abin13 sp013151365",
                "ani": 77.7775,
                "matched_fragments": 63,
                "total_fragments": 313,
                "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Desulfobulbia;o__Desulfobulbales;f__Desulfobulbaceae;g__BMS3Abin13",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Desulfobacterota",
        "c__Desulfobulbia",
        "o__Desulfobulbales",
        "f__Desulfobulbaceae",
        "g__UBA10518",
        "s__"
    ],
    "_genome_taxon": [
        "Deltaproteobacteria",
        "bacterium",
        "d__Bacteria",
        "p__Desulfobacterota",
        "c__Desulfobulbia",
        "o__Desulfobulbales",
        "f__Desulfobulbaceae",
        "g__UBA10518",
        "s__",
        "Bacteria",
        "Desulfobacterota",
        "Desulfobulbia",
        "Desulfobulbales",
        "Desulfobulbaceae",
        "UBA10518",
        "s",
        "",
        ""
    ],
    "_meo": [
        {
            "id": "MEO_0000731",
            "label": "drain water"
        }
    ],
    "quality": 2,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f"
}