{
    "type": "genome",
    "identifier": "GCA_020053715.1",
    "organism": "Nitrospirales bacterium",
    "title": "Nitrospirales bacterium",
    "description": "derived from metagenome; genus undefined",
    "data type": "Genome sequencing and assembly",
    "organization": "Northwestern University",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_020053715.1",
        "bioproject": "PRJNA563685",
        "biosample": "SAMN18076927",
        "wgs_master": "JAGVMQ000000000.1",
        "refseq_category": "na",
        "taxid": "2358460",
        "species_taxid": "2358460",
        "organism_name": "Nitrospirales bacterium",
        "infraspecific_name": "",
        "isolate": "SW_81",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2021/09/20",
        "asm_name": "ASM2005371v1",
        "submitter": "Northwestern University",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/020/053/715/GCA_020053715.1_ASM2005371v1",
        "excluded_from_refseq": "derived from metagenome; genus undefined",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2021-09-20",
    "dateModified": "2021-09-20",
    "datePublished": "2021-09-20",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Nitrospirales bacterium"
        ],
        "sample_taxid": [
            "2358460"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "USA: Sanford Underground Research Facility, Lead SD, Deep Mine Microbial Observatory (DeMMO)"
        ],
        "sample_host_location_id": [],
        "data_size": "1.308 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 30.68,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "4558120",
        "Number of Sequences": "773",
        "Longest Sequences (bp)": "47588",
        "N50 (bp)": "6452",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "59.6",
        "Number of CDSs": "3843",
        "Average Protein Length": "269.3",
        "Coding Ratio (%)": "68.1",
        "Number of rRNAs": "2",
        "Number of tRNAs": "47",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Nitrospira moscoviensis",
                "strain": "strain=NSP M-1",
                "accession": "GCA_001273775.1",
                "taxid": 42253,
                "species_taxid": 42253,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.2285,
                "matched_fragments": 66,
                "total_fragments": 1135,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 30.68,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_002083555.1",
                "gtdb_species": "s__Nitrospira_D sp002083555",
                "ani": 97.5101,
                "matched_fragments": 283,
                "total_fragments": 1135,
                "gtdb_taxonomy": "d__Bacteria;p__Nitrospirota;c__Nitrospiria;o__Nitrospirales;f__Nitrospiraceae;g__Nitrospira_D",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCA_013140455.1",
                "gtdb_species": "s__Nitrospira_D sp013140455",
                "ani": 87.0731,
                "matched_fragments": 228,
                "total_fragments": 1135,
                "gtdb_taxonomy": "d__Bacteria;p__Nitrospirota;c__Nitrospiria;o__Nitrospirales;f__Nitrospiraceae;g__Nitrospira_D",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_002869855.2",
                "gtdb_species": "s__Nitrospira_D sp002869855",
                "ani": 86.7293,
                "matched_fragments": 217,
                "total_fragments": 1135,
                "gtdb_taxonomy": "d__Bacteria;p__Nitrospirota;c__Nitrospiria;o__Nitrospirales;f__Nitrospiraceae;g__Nitrospira_D",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.91",
                "min_intra_species_ani": "97.91",
                "mean_intra_species_af": "0.84",
                "min_intra_species_af": "0.84",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_900403705.1",
                "gtdb_species": "s__Nitrospira_D lenta",
                "ani": 84.5192,
                "matched_fragments": 213,
                "total_fragments": 1135,
                "gtdb_taxonomy": "d__Bacteria;p__Nitrospirota;c__Nitrospiria;o__Nitrospirales;f__Nitrospiraceae;g__Nitrospira_D",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_900299245.1",
                "gtdb_species": "s__Nitrospira_D sp900299245",
                "ani": 81.778,
                "matched_fragments": 148,
                "total_fragments": 1135,
                "gtdb_taxonomy": "d__Bacteria;p__Nitrospirota;c__Nitrospiria;o__Nitrospirales;f__Nitrospiraceae;g__Nitrospira_D",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.261,
        "cell_length": 0.592,
        "doubling_h": 1.049,
        "growth_tmp": 51.687,
        "optimum_tmp": 54.437,
        "optimum_ph": 5.662,
        "genome_size": 3299186.384,
        "gc_content": 51.233,
        "coding_genes": 3216.752,
        "rRNA16S_genes": 1.428,
        "tRNA_genes": 47.476,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 0.6,
        "range_salinity": 0.0,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.666,
        "aerobic_respiration": 0.333,
        "mesophilic_range_tmp": 0.666,
        "thermophilic_range_tmp": 0.333,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 0.4,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.4,
        "spiral_cell_shape": 0.2
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Nitrospirota",
        "c__Nitrospiria",
        "o__Nitrospirales",
        "f__Nitrospiraceae",
        "g__Nitrospira_D",
        "s__"
    ],
    "_genome_taxon": [
        "Nitrospirales",
        "bacterium",
        "d__Bacteria",
        "p__Nitrospirota",
        "c__Nitrospiria",
        "o__Nitrospirales",
        "f__Nitrospiraceae",
        "g__Nitrospira_D",
        "s__",
        "Bacteria",
        "Nitrospirota",
        "Nitrospiria",
        "Nitrospirales",
        "Nitrospiraceae",
        "Nitrospira",
        "D",
        "s",
        "",
        ""
    ],
    "_meo": [
        {
            "id": "MEO_0000731",
            "label": "drain water"
        }
    ],
    "quality": 2,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f"
}