{ "type": "genome", "identifier": "GCA_020054355.1", "organism": "Planctomycetales bacterium", "title": "Planctomycetales bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "Northwestern University", "publication": [ {} ], "properties": { "assembly_accession": "GCA_020054355.1", "bioproject": "PRJNA563685", "biosample": "SAMN18076893", "wgs_master": "JAGVLI000000000.1", "refseq_category": "na", "taxid": "2053591", "species_taxid": "2053591", "organism_name": "Planctomycetales bacterium", "infraspecific_name": "", "isolate": "SW_37", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/09/20", "asm_name": "ASM2005435v1", "submitter": "Northwestern University", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/020/054/355/GCA_020054355.1_ASM2005435v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-09-20", "dateModified": "2021-09-20", "datePublished": "2021-09-20", "_annotation": { "sample_count": 1, "sample_organism": [ "Planctomycetales bacterium" ], "sample_taxid": [ "2053591" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA: Sanford Underground Research Facility, Lead SD, Deep Mine Microbial Observatory (DeMMO)" ], "sample_host_location_id": [], "data_size": "1.566 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 64.61, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "5575399", "Number of Sequences": "1115", "Longest Sequences (bp)": "24217", "N50 (bp)": "5376", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "63.6", "Number of CDSs": "4194", "Average Protein Length": "281.8", "Coding Ratio (%)": "63.6", "Number of rRNAs": "0", "Number of tRNAs": "56", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Urbifossiella limnaea", "strain": "strain=ETA_A1", "accession": "GCA_007747215.1", "taxid": 2528023, "species_taxid": 2528023, "relation_to_type": "type", "validated": true, "ani": 76.165, "matched_fragments": 184, "total_fragments": 1301, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gemmata obscuriglobus", "strain": "strain=UQM 2246", "accession": "GCA_000171775.1", "taxid": 114, "species_taxid": 114, "relation_to_type": "type", "validated": true, "ani": 75.8933, "matched_fragments": 124, "total_fragments": 1301, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gemmata obscuriglobus", "strain": "strain=DSM 5831", "accession": "GCA_003149495.1", "taxid": 114, "species_taxid": 114, "relation_to_type": "type", "validated": true, "ani": 75.8897, "matched_fragments": 131, "total_fragments": 1301, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gemmata obscuriglobus", "strain": "", "accession": "GCA_901538385.1", "taxid": 114, "species_taxid": 114, "relation_to_type": "type", "validated": true, "ani": 75.858, "matched_fragments": 134, "total_fragments": 1301, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gemmata obscuriglobus", "strain": "strain=DSM 5831", "accession": "GCA_008065095.1", "taxid": 114, "species_taxid": 114, "relation_to_type": "type", "validated": true, "ani": 75.8469, "matched_fragments": 132, "total_fragments": 1301, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Limnoglobus roseus", "strain": "strain=PX52", "accession": "GCA_008254045.1", "taxid": 2598579, "species_taxid": 2598579, "relation_to_type": "type", "validated": true, "ani": 75.8363, "matched_fragments": 148, "total_fragments": 1301, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paludisphaera rhizosphaereae", "strain": "strain=JC665", "accession": "GCA_011065895.1", "taxid": 2711216, "species_taxid": 2711216, "relation_to_type": "type", "validated": true, "ani": 75.7275, "matched_fragments": 93, "total_fragments": 1301, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Fimbriiglobus ruber", "strain": "strain=SP5", "accession": "GCA_002197845.1", "taxid": 1908690, "species_taxid": 1908690, "relation_to_type": "type", "validated": true, "ani": 75.6007, "matched_fragments": 128, "total_fragments": 1301, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aquisphaera giovannonii", "strain": "strain=OJF2", "accession": "GCA_008087625.1", "taxid": 406548, "species_taxid": 406548, "relation_to_type": "type", "validated": true, "ani": 75.4903, "matched_fragments": 123, "total_fragments": 1301, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tautonia sociabilis", "strain": "strain=GM2012", "accession": "GCA_003977685.1", "taxid": 2080755, "species_taxid": 2080755, "relation_to_type": "type", "validated": true, "ani": 75.4722, "matched_fragments": 96, "total_fragments": 1301, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tautonia plasticadhaerens", "strain": "strain=ElP", "accession": "GCA_007752535.1", "taxid": 2527974, "species_taxid": 2527974, "relation_to_type": "type", "validated": true, "ani": 75.4073, "matched_fragments": 104, "total_fragments": 1301, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Botrimarina mediterranea", "strain": "strain=Spa11", "accession": "GCA_007753265.1", "taxid": 2528022, "species_taxid": 2528022, "relation_to_type": "type", "validated": true, "ani": 75.2522, "matched_fragments": 52, "total_fragments": 1301, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acidovorax wautersii", "strain": "strain=DSM 27981", "accession": "GCA_900113035.1", "taxid": 1177982, "species_taxid": 1177982, "relation_to_type": "type", "validated": true, "ani": 75.2016, "matched_fragments": 67, "total_fragments": 1301, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gemmatirosa kalamazoonensis", "strain": "strain=KBS708", "accession": "GCA_000522985.1", "taxid": 861299, "species_taxid": 861299, "relation_to_type": "type", "validated": true, "ani": 74.8519, "matched_fragments": 56, "total_fragments": 1301, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Egicoccus halophilus", "strain": "strain=CGMCC 1.14988", "accession": "GCA_014640475.1", "taxid": 1670830, "species_taxid": 1670830, "relation_to_type": "type", "validated": true, "ani": 74.7988, "matched_fragments": 58, "total_fragments": 1301, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kutzneria kofuensis", "strain": "strain=DSM 43851", "accession": "GCA_014203355.1", "taxid": 103725, "species_taxid": 103725, "relation_to_type": "type", "validated": true, "ani": 74.7933, "matched_fragments": 113, "total_fragments": 1301, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Egicoccus halophilus", "strain": "strain=EGI 80432", "accession": "GCA_004300825.1", "taxid": 1670830, "species_taxid": 1670830, "relation_to_type": "type", "validated": true, "ani": 74.7922, "matched_fragments": 59, "total_fragments": 1301, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pyxidicoccus trucidator", "strain": "strain=CA060A", "accession": "GCA_010894435.1", "taxid": 2709662, "species_taxid": 2709662, "relation_to_type": "type", "validated": true, "ani": 74.7242, "matched_fragments": 78, "total_fragments": 1301, "ani_threshold": 95, "status": "below_threshold" } ], 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