{ "type": "genome", "identifier": "GCA_020054415.1", "organism": "Candidatus Symbiopectobacterium sp.", "title": "Candidatus Symbiopectobacterium sp.", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "Goethe University Frankfurt am Main/Germany", "publication": [ {} ], "properties": { "assembly_accession": "GCA_020054415.1", "bioproject": "PRJNA744378", "biosample": "SAMN20089398", "wgs_master": "JAHWCO000000000.1", "refseq_category": "na", "taxid": "2816440", "species_taxid": "2816440", "organism_name": "Candidatus Symbiopectobacterium sp.", "infraspecific_name": "", "isolate": "FE21-4", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/09/20", "asm_name": "ASM2005441v1", "submitter": "Goethe University Frankfurt am Main/Germany", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/020/054/415/GCA_020054415.1_ASM2005441v1", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-09-20", "dateModified": "2021-09-20", "datePublished": "2021-09-20", "_annotation": { "sample_count": 1, "sample_organism": [ "Candidatus Symbiopectobacterium sp." ], "sample_taxid": [ "2816440" ], "sample_host_organism": [ "Rhodnius prolixus 5th instar" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Brazil: Belo Horizonte" ], "sample_host_location_id": [], "data_size": "0.932 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 66.67, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "3288112", "Number of Sequences": "743", "Longest Sequences (bp)": "39940", "N50 (bp)": "6992", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "51.7", "Number of CDSs": "3522", "Average Protein Length": "233.8", "Coding Ratio (%)": "75.1", "Number of rRNAs": "2", "Number of tRNAs": "36", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Pectobacterium polaris", "strain": "strain=NIBIO1006", "accession": "GCA_002307355.1", "taxid": 2042057, "species_taxid": 2042057, "relation_to_type": "type", "validated": true, "ani": 79.432, "matched_fragments": 315, "total_fragments": 710, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pectobacterium fontis", "strain": "strain=M022", "accession": "GCA_000803215.1", "taxid": 2558042, "species_taxid": 2558042, "relation_to_type": "type", "validated": true, "ani": 79.3062, "matched_fragments": 298, "total_fragments": 710, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brenneria roseae subsp. americana", "strain": "strain=LMG 27715", "accession": "GCA_003115815.1", "taxid": 1508507, "species_taxid": 1509241, "relation_to_type": "type", "validated": true, "ani": 79.2916, "matched_fragments": 281, "total_fragments": 710, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pectobacterium actinidiae", "strain": "strain=KKH3", "accession": "GCA_000803315.1", "taxid": 1507808, "species_taxid": 1507808, "relation_to_type": "type", "validated": true, "ani": 79.243, "matched_fragments": 305, "total_fragments": 710, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pectobacterium colocasium", "strain": "strain=LJ1", "accession": "GCA_020181655.1", "taxid": 2878098, "species_taxid": 2878098, "relation_to_type": "type", "validated": true, "ani": 79.2423, "matched_fragments": 301, "total_fragments": 710, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pectobacterium quasiaquaticum", "strain": "strain=A477-S1-J17", "accession": "GCA_014946775.2", "taxid": 2774015, "species_taxid": 2774015, "relation_to_type": "type", "validated": true, "ani": 79.2338, "matched_fragments": 308, "total_fragments": 710, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pectobacterium versatile", "strain": "strain=CFBP6051", "accession": "GCA_004296685.1", "taxid": 2488639, "species_taxid": 2488639, "relation_to_type": "type", "validated": true, "ani": 79.231, "matched_fragments": 308, "total_fragments": 710, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pectobacterium brasiliense", "strain": "strain=IPO:3540 CFBP:6617 ATCC:BAA-417 IBSBF:1692", "accession": "GCA_016950255.1", "taxid": 180957, "species_taxid": 180957, "relation_to_type": "type", "validated": true, "ani": 79.198, "matched_fragments": 327, "total_fragments": 710, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pectobacterium brasiliense", "strain": "strain=LMG 21371", "accession": "GCA_000754695.1", "taxid": 180957, "species_taxid": 180957, "relation_to_type": "type", "validated": true, "ani": 79.1929, "matched_fragments": 326, "total_fragments": 710, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dickeya fangzhongdai", "strain": "strain=DSM 101947", "accession": "GCA_002812485.1", "taxid": 1778540, "species_taxid": 1778540, "relation_to_type": "type", "validated": true, "ani": 79.1358, "matched_fragments": 298, "total_fragments": 710, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dickeya fangzhongdai", "strain": "strain=CGMCC 1.15464", "accession": "GCA_014642955.1", "taxid": 1778540, "species_taxid": 1778540, "relation_to_type": "type", "validated": true, "ani": 79.0865, "matched_fragments": 292, "total_fragments": 710, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dickeya solani", "strain": "strain=IPO 2222", "accession": "GCA_001644705.1", "taxid": 1089444, "species_taxid": 1089444, "relation_to_type": "type", "validated": true, "ani": 79.0699, "matched_fragments": 280, "total_fragments": 710, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dickeya dadantii", "strain": "strain=NCPPB 898", "accession": "GCA_000406145.1", "taxid": 204038, "species_taxid": 204038, "relation_to_type": "type", "validated": true, "ani": 79.0018, "matched_fragments": 277, "total_fragments": 710, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pectobacterium zantedeschiae", "strain": "strain=9M", "accession": "GCA_004137795.1", "taxid": 2034769, "species_taxid": 2034769, "relation_to_type": "type", "validated": true, "ani": 78.9938, "matched_fragments": 296, "total_fragments": 710, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dickeya solani", "strain": "strain=IPO 2222", "accession": "GCA_000400795.1", "taxid": 1089444, "species_taxid": 1089444, "relation_to_type": "type", "validated": true, "ani": 78.9929, "matched_fragments": 281, "total_fragments": 710, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pectobacterium punjabense", "strain": "strain=SS95", "accession": "GCA_003028395.1", "taxid": 2108399, "species_taxid": 2108399, "relation_to_type": "type", "validated": true, "ani": 78.9554, "matched_fragments": 287, "total_fragments": 710, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dickeya undicola", "strain": "strain=2B12", "accession": "GCA_000784735.1", "taxid": 1577887, "species_taxid": 1577887, "relation_to_type": "type", "validated": true, "ani": 78.9038, "matched_fragments": 281, "total_fragments": 710, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dickeya dadantii", "strain": "strain=DSM 18020", "accession": "GCA_003049785.1", "taxid": 204038, "species_taxid": 204038, "relation_to_type": "type", "validated": true, "ani": 78.9027, "matched_fragments": 290, "total_fragments": 710, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dickeya zeae", "strain": "strain=NCPPB 2538", "accession": "GCA_000406165.1", "taxid": 204042, "species_taxid": 204042, "relation_to_type": "type", "validated": true, "ani": 78.8173, "matched_fragments": 263, "total_fragments": 710, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dickeya dadantii subsp. dieffenbachiae", "strain": "strain=NCPPB 2976", "accession": "GCA_000406185.1", "taxid": 204040, "species_taxid": 204038, "relation_to_type": "type", "validated": true, "ani": 78.7979, "matched_fragments": 299, "total_fragments": 710, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dickeya parazeae", "strain": "strain=S31", "accession": "GCA_017897605.1", "taxid": 2893572, "species_taxid": 2893572, "relation_to_type": "type", "validated": true, "ani": 78.6925, "matched_fragments": 256, "total_fragments": 710, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Serratia ficaria", "strain": "strain=NCTC12148", "accession": "GCA_900187015.1", "taxid": 61651, "species_taxid": 61651, "relation_to_type": "type", "validated": true, "ani": 78.6731, "matched_fragments": 235, "total_fragments": 710, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Serratia ficaria", "strain": "strain=NBRC 102596", "accession": "GCA_001590885.1", "taxid": 61651, "species_taxid": 61651, "relation_to_type": "type", "validated": true, "ani": 78.6157, "matched_fragments": 226, "total_fragments": 710, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Serratia nevei", "strain": "strain=S15", "accession": "GCA_008364245.1", "taxid": 2703794, "species_taxid": 2703794, "relation_to_type": "type", "validated": true, "ani": 78.4825, "matched_fragments": 255, "total_fragments": 710, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Serratia plymuthica", "strain": "strain=FDAARGOS_895", "accession": "GCA_016027675.1", "taxid": 82996, "species_taxid": 82996, "relation_to_type": "type", "validated": true, "ani": 78.4489, "matched_fragments": 247, "total_fragments": 710, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Serratia plymuthica", "strain": "strain=NBRC 102599", "accession": "GCA_001590925.1", "taxid": 82996, "species_taxid": 82996, "relation_to_type": "type", "validated": true, "ani": 78.348, "matched_fragments": 245, "total_fragments": 710, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Klebsiella pasteurii", "strain": "", "accession": "GCA_902158725.1", "taxid": 2587529, "species_taxid": 2587529, "relation_to_type": "type", "validated": true, "ani": 78.3009, "matched_fragments": 180, "total_fragments": 710, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Klebsiella grimontii", "strain": "strain=06D021", "accession": "GCA_900200035.1", "taxid": 2058152, "species_taxid": 2058152, "relation_to_type": "type", "validated": true, "ani": 78.151, "matched_fragments": 184, "total_fragments": 710, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mixta calida", "strain": "strain=LMG 25383", "accession": "GCA_002095355.1", "taxid": 665913, "species_taxid": 665913, "relation_to_type": "type", "validated": true, "ani": 78.1276, "matched_fragments": 196, "total_fragments": 710, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter roggenkampii", "strain": "strain=DSM 16690", "accession": "GCA_024390995.1", "taxid": 1812935, "species_taxid": 1812935, "relation_to_type": "type", "validated": true, "ani": 78.1064, "matched_fragments": 212, "total_fragments": 710, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cronobacter sakazakii", "strain": "strain=ATCC 29544", "accession": "GCA_001971035.1", "taxid": 28141, "species_taxid": 28141, "relation_to_type": "type", "validated": true, "ani": 78.0108, "matched_fragments": 187, "total_fragments": 710, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 66.67, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_018777385.1", "gtdb_species": "s__Symbiopectobacterium endolongispinus", "ani": 95.7936, "matched_fragments": 611, "total_fragments": 710, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Symbiopectobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.06", "min_intra_species_ani": "96.15", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.84", "num_clustered_genomes": 3, "status": "conclusive" }, { "accession": "GCF_015762685.1", "gtdb_species": "s__Symbiopectobacterium sp015762685", "ani": 94.2993, "matched_fragments": 613, "total_fragments": 710, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Symbiopectobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_015548865.1", "gtdb_species": "s__Symbiopectobacterium marcescens_A", "ani": 86.633, "matched_fragments": 595, "total_fragments": 710, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Symbiopectobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000803215.1", "gtdb_species": "s__Pectobacterium fontis", "ani": 79.3062, "matched_fragments": 298, "total_fragments": 710, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Pectobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000803315.1", "gtdb_species": "s__Pectobacterium actinidiae", "ani": 79.2372, "matched_fragments": 305, "total_fragments": 710, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Pectobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.49", "min_intra_species_ani": "98.49", "mean_intra_species_af": "0.97", "min_intra_species_af": "0.92", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_013449685.1", "gtdb_species": "s__Pectobacterium brasiliense_A", "ani": 79.1984, "matched_fragments": 307, "total_fragments": 710, "gtdb_taxonomy": 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"d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Pectobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.24", "min_intra_species_ani": "98.49", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.91", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_000784735.1", "gtdb_species": "s__Dickeya undicola", "ani": 78.9039, "matched_fragments": 281, "total_fragments": 710, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Dickeya", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.06", "min_intra_species_ani": "99.05", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.93", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_000406165.1", "gtdb_species": "s__Dickeya zeae", "ani": 78.8335, "matched_fragments": 261, "total_fragments": 710, "gtdb_taxonomy": 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