{
    "type": "genome",
    "identifier": "GCA_020054425.1",
    "organism": "Kocuria sp.",
    "title": "Kocuria sp.",
    "description": "derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "Goethe University Frankfurt am Main/Germany",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_020054425.1",
        "bioproject": "PRJNA744378",
        "biosample": "SAMN20089397",
        "wgs_master": "JAHWCN000000000.1",
        "refseq_category": "na",
        "taxid": "1871328",
        "species_taxid": "1871328",
        "organism_name": "Kocuria sp.",
        "infraspecific_name": "",
        "isolate": "FE21-3",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2021/09/20",
        "asm_name": "ASM2005442v1",
        "submitter": "Goethe University Frankfurt am Main/Germany",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/020/054/425/GCA_020054425.1_ASM2005442v1",
        "excluded_from_refseq": "derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2021-09-20",
    "dateModified": "2021-09-20",
    "datePublished": "2021-09-20",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Kocuria sp."
        ],
        "sample_taxid": [
            "1871328"
        ],
        "sample_host_organism": [
            "Rhodnius prolixus 5th instar"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Brazil: Belo Horizonte"
        ],
        "sample_host_location_id": [],
        "data_size": "0.781 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "2857444",
        "Number of Sequences": "115",
        "Longest Sequences (bp)": "140521",
        "N50 (bp)": "33425",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "69.2",
        "Number of CDSs": "2454",
        "Average Protein Length": "333.9",
        "Coding Ratio (%)": "86.0",
        "Number of rRNAs": "0",
        "Number of tRNAs": "42",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Kocuria indica",
                "strain": "strain=NIO-1021",
                "accession": "GCA_003667205.1",
                "taxid": 1049583,
                "species_taxid": 1049583,
                "relation_to_type": "type",
                "validated": true,
                "ani": 95.3982,
                "matched_fragments": 744,
                "total_fragments": 899,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Kocuria indica",
                "strain": "strain=NIO-1021",
                "accession": "GCA_900177335.1",
                "taxid": 1049583,
                "species_taxid": 1049583,
                "relation_to_type": "type",
                "validated": true,
                "ani": 95.3211,
                "matched_fragments": 747,
                "total_fragments": 899,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Kocuria indica",
                "strain": "strain=DSM 25126",
                "accession": "GCA_002237805.1",
                "taxid": 1049583,
                "species_taxid": 1049583,
                "relation_to_type": "type",
                "validated": true,
                "ani": 95.3208,
                "matched_fragments": 747,
                "total_fragments": 899,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Kocuria tytonis",
                "strain": "strain=442",
                "accession": "GCA_003226895.2",
                "taxid": 2054280,
                "species_taxid": 2054280,
                "relation_to_type": "type",
                "validated": true,
                "ani": 85.151,
                "matched_fragments": 669,
                "total_fragments": 899,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Kocuria rhizophila",
                "strain": "strain=TA68",
                "accession": "GCA_003667225.1",
                "taxid": 72000,
                "species_taxid": 72000,
                "relation_to_type": "type",
                "validated": true,
                "ani": 84.8068,
                "matched_fragments": 623,
                "total_fragments": 899,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Kocuria varians",
                "strain": "strain=NBRC 15358",
                "accession": "GCA_006539885.1",
                "taxid": 1272,
                "species_taxid": 1272,
                "relation_to_type": "type",
                "validated": true,
                "ani": 84.7069,
                "matched_fragments": 657,
                "total_fragments": 899,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Kocuria tytonicola",
                "strain": "strain=DSM 104133",
                "accession": "GCA_003687455.1",
                "taxid": 2055946,
                "species_taxid": 2055946,
                "relation_to_type": "type",
                "validated": true,
                "ani": 84.5162,
                "matched_fragments": 587,
                "total_fragments": 899,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Micrococcus luteus",
                "strain": "strain=ATCC 4698",
                "accession": "GCA_003417425.1",
                "taxid": 1270,
                "species_taxid": 1270,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.4417,
                "matched_fragments": 221,
                "total_fragments": 899,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Arthrobacter sedimenti",
                "strain": "strain=MIC A30",
                "accession": "GCA_011750795.2",
                "taxid": 2694931,
                "species_taxid": 2694931,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.5606,
                "matched_fragments": 188,
                "total_fragments": 899,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Arthrobacter jiangjiafuii",
                "strain": "strain=zg-ZUI227",
                "accession": "GCA_018622995.1",
                "taxid": 2817475,
                "species_taxid": 2817475,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.3592,
                "matched_fragments": 190,
                "total_fragments": 899,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Arthrobacter jiangjiafuii",
                "strain": "strain=zg-ZUI227",
                "accession": "GCA_017898065.1",
                "taxid": 2817475,
                "species_taxid": 2817475,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.3012,
                "matched_fragments": 190,
                "total_fragments": 899,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Georgenia yuyongxinii",
                "strain": "strain=Z443",
                "accession": "GCA_006352065.1",
                "taxid": 2589797,
                "species_taxid": 2589797,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.0901,
                "matched_fragments": 165,
                "total_fragments": 899,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_000786655.1",
                "gtdb_species": "s__Kocuria marina_A",
                "ani": 96.3584,
                "matched_fragments": 787,
                "total_fragments": 899,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Micrococcaceae;g__Kocuria",
                "ani_circumscription_radius": 95.811,
                "mean_intra_species_ani": "96.52",
                "min_intra_species_ani": "96.52",
                "mean_intra_species_af": "0.87",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 2,
                "status": "conclusive"
            },
            {
                "accession": "GCA_014652975.1",
                "gtdb_species": "s__Kocuria marina",
                "ani": 95.1395,
                "matched_fragments": 762,
                "total_fragments": 899,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Micrococcaceae;g__Kocuria",
                "ani_circumscription_radius": 95.811,
                "mean_intra_species_ani": "98.16",
                "min_intra_species_ani": "96.52",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.86",
                "num_clustered_genomes": 16,
                "status": "-"
            },
            {
                "accession": "GCF_003226895.2",
                "gtdb_species": "s__Kocuria tytonis",
                "ani": 85.151,
                "matched_fragments": 669,
                "total_fragments": 899,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Micrococcaceae;g__Kocuria",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000010285.1",
                "gtdb_species": "s__Kocuria rhizophila_A",
                "ani": 85.1376,
                "matched_fragments": 682,
                "total_fragments": 899,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Micrococcaceae;g__Kocuria",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.71",
                "min_intra_species_ani": "97.98",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 9,
                "status": "-"
            },
            {
                "accession": "GCF_003667225.1",
                "gtdb_species": "s__Kocuria rhizophila",
                "ani": 84.8023,
                "matched_fragments": 624,
                "total_fragments": 899,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Micrococcaceae;g__Kocuria",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.80",
                "min_intra_species_ani": "97.11",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.85",
                "num_clustered_genomes": 19,
                "status": "-"
            },
            {
                "accession": "GCF_006539885.1",
                "gtdb_species": "s__Kocuria varians",
                "ani": 84.7069,
                "matched_fragments": 657,
                "total_fragments": 899,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Micrococcaceae;g__Kocuria",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.47",
                "min_intra_species_ani": "99.47",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.94",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_003687455.1",
                "gtdb_species": "s__Kocuria tytonicola",
                "ani": 84.5451,
                "matched_fragments": 585,
                "total_fragments": 899,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Micrococcaceae;g__Kocuria",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.95",
                "min_intra_species_ani": "98.95",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.94",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_007681555.1",
                "gtdb_species": "s__Kocuria salsicia",
                "ani": 84.3907,
                "matched_fragments": 682,
                "total_fragments": 899,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Micrococcaceae;g__Kocuria",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.09",
                "min_intra_species_ani": "95.42",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 8,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.009,
        "cell_length": -0.009,
        "doubling_h": null,
        "growth_tmp": 29.038,
        "optimum_tmp": 29.863,
        "optimum_ph": 7.416,
        "genome_size": 3128484.398,
        "gc_content": 71.521,
        "coding_genes": 2561.833,
        "rRNA16S_genes": 3.0,
        "tRNA_genes": 47.333,
        "gram_stain": 1.0,
        "sporulation": 0.125,
        "motility": 0.0,
        "range_salinity": null,
        "facultative_respiration": 0.058,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 0.941,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
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        "bacillus_cell_shape": 0.0,
        "coccus_cell_shape": 1.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Actinomycetota",
        "c__Actinomycetes",
        "o__Actinomycetales",
        "f__Micrococcaceae",
        "g__Kocuria",
        "s__Kocuria marina_A"
    ],
    "_genome_taxon": [
        "Kocuria",
        "sp.",
        "d__Bacteria",
        "p__Actinomycetota",
        "c__Actinomycetes",
        "o__Actinomycetales",
        "f__Micrococcaceae",
        "g__Kocuria",
        "s__Kocuria marina_A",
        "Bacteria",
        "Actinomycetota",
        "Actinomycetes",
        "Actinomycetales",
        "Micrococcaceae",
        "Kocuria",
        "Kocuria",
        "marina",
        "A"
    ],
    "_meo": [
        {
            "id": "MEO_0000470",
            "label": "hindgut"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}