{ "type": "genome", "identifier": "GCA_020054775.1", "organism": "Thermosipho sp. (in: thermotogales)", "title": "Thermosipho sp. (in: thermotogales)", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "The Ohio State University", "publication": [ {} ], "properties": { "assembly_accession": "GCA_020054775.1", "bioproject": "PRJNA308326", "biosample": "SAMN17087339", "wgs_master": "JAIHAP000000000.1", "refseq_category": "na", "taxid": "1968895", "species_taxid": "1968895", "organism_name": "Thermosipho sp. (in: thermotogales)", "infraspecific_name": "", "isolate": "M1_7_4_bin.35", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/09/20", "asm_name": "ASM2005477v1", "submitter": "The Ohio State University", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/020/054/775/GCA_020054775.1_ASM2005477v1", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-09-20", "dateModified": "2021-09-20", "datePublished": "2021-09-20", "_annotation": { "sample_count": 1, "sample_organism": [ "Thermosipho sp. (in: thermotogales)" ], "sample_taxid": [ "1968895" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA: Oklahoma" ], "sample_host_location_id": [], "data_size": "0.563 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 95.37, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2035739", "Number of Sequences": "107", "Longest Sequences (bp)": "106558", "N50 (bp)": "25660", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "30.4", "Number of CDSs": "1972", "Average Protein Length": "303.5", "Coding Ratio (%)": "88.2", "Number of rRNAs": "1", "Number of tRNAs": "45", "Number of CRISPRs": "5" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Thermosipho africanus", "strain": "strain=Ob7", 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46541, "relation_to_type": "type", "validated": true, "ani": 78.0814, "matched_fragments": 212, "total_fragments": 628, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thermosipho affectus", "strain": "strain=ik275mar", "accession": "GCA_001990485.1", "taxid": 660294, "species_taxid": 660294, "relation_to_type": "type", "validated": true, "ani": 77.7828, "matched_fragments": 190, "total_fragments": 628, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thermosipho ferrireducens", "strain": "strain=JL129W03", "accession": "GCA_017358165.1", "taxid": 2571116, "species_taxid": 2571116, "relation_to_type": "type", "validated": true, "ani": 76.6891, "matched_fragments": 89, "total_fragments": 628, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 95.37, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_003351105.1", "gtdb_species": "s__Thermosipho africanus", "ani": 98.401, "matched_fragments": 527, "total_fragments": 628, "gtdb_taxonomy": "d__Bacteria;p__Thermotogota;c__Thermotogae;o__Thermotogales;f__Fervidobacteriaceae;g__Thermosipho", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.56", "min_intra_species_ani": "98.53", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.90", "num_clustered_genomes": 3, "status": "conclusive" }, { "accession": "GCF_014201655.1", "gtdb_species": "s__Thermosipho japonicus", "ani": 93.9661, "matched_fragments": 506, "total_fragments": 628, "gtdb_taxonomy": "d__Bacteria;p__Thermotogota;c__Thermotogae;o__Thermotogales;f__Fervidobacteriaceae;g__Thermosipho", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "95.40", "min_intra_species_ani": "95.40", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.94", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_000016905.1", "gtdb_species": "s__Thermosipho melanesiensis", "ani": 78.0704, "matched_fragments": 212, 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"africanus" ], "_meo": [ { "id": "MEO_0001480", "label": "subsurface" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }