{ "type": "genome", "identifier": "GCA_020054885.1", "organism": "Shewanella sp.", "title": "Shewanella sp.", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "The Ohio State University", "publication": [ {} ], "properties": { "assembly_accession": "GCA_020054885.1", "bioproject": "PRJNA308326", "biosample": "SAMN17087343", "wgs_master": "JAIMZM000000000.1", "refseq_category": "na", "taxid": "50422", "species_taxid": "50422", "organism_name": "Shewanella sp.", "infraspecific_name": "", "isolate": "M2_7_6_bin.1", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/09/20", "asm_name": "ASM2005488v1", "submitter": "The Ohio State University", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/020/054/885/GCA_020054885.1_ASM2005488v1", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-09-20", "dateModified": "2021-09-20", "datePublished": "2021-09-20", "_annotation": { "sample_count": 1, "sample_organism": [ "Shewanella sp." ], "sample_taxid": [ "50422" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA: Oklahoma" ], "sample_host_location_id": [], "data_size": "1.147 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 79.17, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "4010430", "Number of Sequences": "142", "Longest Sequences (bp)": "104677", "N50 (bp)": "43199", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "52.8", "Number of CDSs": "3480", "Average Protein Length": "328.7", "Coding Ratio (%)": "85.6", "Number of rRNAs": "0", "Number of tRNAs": "61", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Shewanella chilikensis", "strain": "strain=KCTC 22540", "accession": "GCA_014651975.1", "taxid": 558541, "species_taxid": 558541, "relation_to_type": "type", "validated": true, "ani": 98.7558, "matched_fragments": 1226, "total_fragments": 1267, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Shewanella chilikensis", "strain": "strain=JC5", "accession": "GCA_003217175.1", "taxid": 558541, "species_taxid": 558541, "relation_to_type": "type", "validated": true, "ani": 98.7514, "matched_fragments": 1223, "total_fragments": 1267, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Shewanella chilikensis", "strain": "strain=CCUG 57101", "accession": "GCA_023283475.1", "taxid": 558541, "species_taxid": 558541, "relation_to_type": "type", "validated": true, "ani": 98.7482, "matched_fragments": 1227, "total_fragments": 1267, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Shewanella chilikensis", "strain": "strain=JC5", "accession": "GCA_002836945.1", "taxid": 558541, "species_taxid": 558541, "relation_to_type": "type", "validated": true, "ani": 98.7407, "matched_fragments": 1213, "total_fragments": 1267, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Shewanella indica", "strain": "strain=KJW27", "accession": "GCA_002836975.1", "taxid": 768528, "species_taxid": 768528, "relation_to_type": "type", "validated": true, "ani": 95.8318, "matched_fragments": 1211, "total_fragments": 1267, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Shewanella algae", "strain": "strain=NBRC 103173", "accession": "GCA_001598875.1", "taxid": 38313, "species_taxid": 38313, "relation_to_type": "type", "validated": true, "ani": 94.6165, "matched_fragments": 1153, "total_fragments": 1267, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shewanella carassii", "strain": "strain=08MAS2251", "accession": "GCA_002777975.1", "taxid": 1987584, "species_taxid": 1987584, "relation_to_type": "type", "validated": true, "ani": 93.5703, "matched_fragments": 1131, "total_fragments": 1267, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shewanella jiangmenensis", "strain": "strain=JM162201", "accession": "GCA_018596335.1", "taxid": 2837387, "species_taxid": 2837387, "relation_to_type": "type", "validated": true, "ani": 78.313, "matched_fragments": 360, "total_fragments": 1267, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shewanella salipaludis", "strain": "strain=SHSM-M6", "accession": "GCA_012911865.1", "taxid": 2723052, "species_taxid": 2723052, "relation_to_type": "type", "validated": true, "ani": 78.2437, "matched_fragments": 362, "total_fragments": 1267, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shewanella aquimarina", "strain": "strain=JCM 12193", "accession": "GCA_023349185.1", "taxid": 260365, "species_taxid": 260365, "relation_to_type": "type", "validated": true, "ani": 78.0317, "matched_fragments": 342, "total_fragments": 1267, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shewanella marisflavi", "strain": "strain=JCM 12192", "accession": "GCA_023283925.1", "taxid": 260364, "species_taxid": 260364, "relation_to_type": "type", "validated": true, "ani": 77.7048, "matched_fragments": 300, "total_fragments": 1267, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 79.17, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_002836945.1", "gtdb_species": "s__Shewanella chilikensis", "ani": 98.7407, "matched_fragments": 1213, "total_fragments": 1267, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Shewanellaceae;g__Shewanella", "ani_circumscription_radius": 95.7827, "mean_intra_species_ani": "99.40", "min_intra_species_ani": "98.79", "mean_intra_species_af": "0.97", "min_intra_species_af": "0.93", "num_clustered_genomes": 5, "status": "inconclusive" }, { "accession": "GCF_002836975.1", "gtdb_species": "s__Shewanella indica", "ani": 95.8318, "matched_fragments": 1211, "total_fragments": 1267, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Shewanellaceae;g__Shewanella", "ani_circumscription_radius": 95.7827, "mean_intra_species_ani": "98.42", "min_intra_species_ani": "98.01", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.93", "num_clustered_genomes": 6, "status": "inconclusive" }, { "accession": "GCF_009183365.2", "gtdb_species": "s__Shewanella algae", "ani": 94.5583, "matched_fragments": 1194, "total_fragments": 1267, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Shewanellaceae;g__Shewanella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.21", "min_intra_species_ani": "97.66", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.92", "num_clustered_genomes": 87, "status": "-" }, { "accession": "GCF_002777975.1", "gtdb_species": "s__Shewanella carassii", "ani": 93.5636, "matched_fragments": 1132, "total_fragments": 1267, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Shewanellaceae;g__Shewanella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.99", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_017354985.1", "gtdb_species": "s__Shewanella sp017354985", "ani": 78.6833, "matched_fragments": 421, "total_fragments": 1267, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Shewanellaceae;g__Shewanella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.75", "min_intra_species_ani": "95.81", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.92", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_003957745.1", "gtdb_species": "s__Shewanella khirikhana", "ani": 78.4166, "matched_fragments": 408, "total_fragments": 1267, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Shewanellaceae;g__Shewanella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003353085.1", "gtdb_species": "s__Shewanella corallii", "ani": 78.4074, "matched_fragments": 273, "total_fragments": 1267, "gtdb_taxonomy": 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