{ "type": "genome", "identifier": "GCA_020055035.1", "organism": "Desulfomicrobiaceae bacterium", "title": "Desulfomicrobiaceae bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "The Ohio State University", "publication": [ {} ], "properties": { "assembly_accession": "GCA_020055035.1", "bioproject": "PRJNA308326", "biosample": "SAMN17087350", "wgs_master": "JAIHAX000000000.1", "refseq_category": "na", "taxid": "2053547", "species_taxid": "2053547", "organism_name": "Desulfomicrobiaceae bacterium", "infraspecific_name": "", "isolate": "WD_1_bin.17", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/09/20", "asm_name": "ASM2005503v1", "submitter": "The Ohio State University", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/020/055/035/GCA_020055035.1_ASM2005503v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-09-20", "dateModified": "2021-09-20", "datePublished": "2021-09-20", "_annotation": { "sample_count": 1, "sample_organism": [ "Desulfomicrobiaceae bacterium" ], "sample_taxid": [ "2053547" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA: Oklahoma" ], "sample_host_location_id": [], "data_size": "0.382 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 66.67, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "1361938", "Number of Sequences": "129", "Longest Sequences (bp)": "42212", "N50 (bp)": "10666", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "63.3", "Number of CDSs": "1195", "Average Protein Length": "320.2", "Coding Ratio (%)": "84.3", "Number of rRNAs": "0", "Number of tRNAs": "24", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Desulfomicrobium escambiense", "strain": "strain=DSM 10707", "accession": "GCA_000428825.1", "taxid": 29503, "species_taxid": 29503, "relation_to_type": "type", "validated": true, "ani": 77.7507, "matched_fragments": 108, "total_fragments": 381, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Desulfomicrobium apsheronum", "strain": "strain=DSM 5918", "accession": "GCA_900114115.1", "taxid": 52560, "species_taxid": 52560, "relation_to_type": "type", "validated": true, "ani": 77.1085, "matched_fragments": 85, "total_fragments": 381, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Desulfomicrobium orale", "strain": "strain=DSM 12838", "accession": "GCA_001553625.1", "taxid": 132132, "species_taxid": 132132, "relation_to_type": "type", "validated": true, "ani": 77.018, "matched_fragments": 75, "total_fragments": 381, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudodesulfovibrio hydrargyri", "strain": "strain=BerOc1", "accession": "GCA_001874525.1", "taxid": 2125990, "species_taxid": 2125990, "relation_to_type": "type", "validated": true, "ani": 76.9697, "matched_fragments": 51, "total_fragments": 381, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Desulfomicrobium baculatum", "strain": "strain=DSM 4028", "accession": "GCA_000023225.1", "taxid": 899, "species_taxid": 899, "relation_to_type": "type", "validated": true, "ani": 76.906, "matched_fragments": 92, "total_fragments": 381, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Desulfovibrio sulfodismutans", "strain": "strain=DSM 3696", "accession": "GCA_013376455.1", "taxid": 63561, "species_taxid": 63561, "relation_to_type": "type", "validated": true, "ani": 76.6424, "matched_fragments": 66, "total_fragments": 381, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Desulfovibrio sulfodismutans", "strain": "strain=DSM 3696", "accession": "GCA_010499425.1", "taxid": 63561, "species_taxid": 63561, "relation_to_type": "type", "validated": true, "ani": 76.5064, "matched_fragments": 63, "total_fragments": 381, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudodesulfovibrio aespoeensis", "strain": "strain=Aspo-2", "accession": "GCA_000176915.2", "taxid": 182210, "species_taxid": 182210, "relation_to_type": "type", "validated": true, "ani": 76.3384, "matched_fragments": 57, "total_fragments": 381, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Fundidesulfovibrio magnetotacticus", "strain": "strain=FSS-1", "accession": "GCA_013019105.1", "taxid": 2730080, 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"N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014873765.1", "gtdb_species": "s__Desulfomicrobium macestii", "ani": 77.2105, "matched_fragments": 89, "total_fragments": 381, "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota_I;c__Desulfovibrionia;o__Desulfovibrionales;f__Desulfomicrobiaceae;g__Desulfomicrobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.27", "min_intra_species_ani": "98.27", "mean_intra_species_af": "0.85", "min_intra_species_af": "0.85", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_001553625.1", "gtdb_species": "s__Desulfomicrobium orale", "ani": 77.018, "matched_fragments": 75, "total_fragments": 381, "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota_I;c__Desulfovibrionia;o__Desulfovibrionales;f__Desulfomicrobiaceae;g__Desulfomicrobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", 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"99.99", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.99", "num_clustered_genomes": 2, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.245, "cell_length": 0.183, "doubling_h": 0.703, "growth_tmp": 35.233, "optimum_tmp": 43.75, "optimum_ph": null, "genome_size": 3599899.544, "gc_content": 60.4, "coding_genes": 2936.0, "rRNA16S_genes": 2.0, "tRNA_genes": 60.5, "gram_stain": 0.0, "sporulation": 0.0, "motility": 1.0, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 1.0, "aerobic_respiration": 0.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_gtdb_taxon": [ "d__Bacteria", "p__Desulfobacterota", "c__Desulfovibrionia", "o__Desulfovibrionales", "f__Desulfomicrobiaceae", "g__Thermodesulfomicrobium", "s__Thermodesulfomicrobium sp003530935" ], "_genome_taxon": [ "Desulfomicrobiaceae", "bacterium", "d__Bacteria", "p__Desulfobacterota", "c__Desulfovibrionia", "o__Desulfovibrionales", "f__Desulfomicrobiaceae", "g__Thermodesulfomicrobium", "s__Thermodesulfomicrobium sp003530935", "Bacteria", "Desulfobacterota", "Desulfovibrionia", "Desulfovibrionales", "Desulfomicrobiaceae", "Thermodesulfomicrobium", "Thermodesulfomicrobium", "sp003530935" ], "_meo": [ { "id": "MEO_0001480", "label": "subsurface" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }