{ "type": "genome", "identifier": "GCA_020055625.2", "organism": "Methanobacterium paludis", "title": "Methanobacterium paludis", "description": "derived from metagenome; fragmented assembly", "data type": "Genome sequencing and assembly", "organization": "Catedras Conacyt-Instituto de Biotecnologia, Universidad Nacional Autonoma de Mexico", "publication": [ {} ], "properties": { "assembly_accession": "GCA_020055625.2", "bioproject": "PRJNA759916", "biosample": "SAMN21209357", "wgs_master": "JAIPRP000000000.2", "refseq_category": "na", "taxid": "868131", "species_taxid": "868131", "organism_name": "Methanobacterium paludis", "infraspecific_name": "", "isolate": "IBT-C12", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/01/09", "asm_name": "ASM2005562v2", "submitter": "Catedras Conacyt-Instituto de Biotecnologia, Universidad Nacional Autonoma de Mexico", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/020/055/625/GCA_020055625.2_ASM2005562v2", "excluded_from_refseq": "derived from metagenome; fragmented assembly", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-01-09", "dateModified": "2022-01-09", "datePublished": "2022-01-09", "_annotation": { "sample_count": 1, "sample_organism": [ "Methanobacterium paludis" ], "sample_taxid": [ "868131" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Mexico: Morelos, Apatlaco basin" ], "sample_host_location_id": [], "data_size": "0.735 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 76.58, "contamination": 9.9, "strain_heterogeneity": 20.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2696644", "Number of Sequences": "374", "Longest Sequences (bp)": "1849042", "N50 (bp)": "1849042", "Gap Ratio (%)": "2.080364", "GCcontent (%)": "36.0", "Number of CDSs": "2514", "Average Protein Length": "217.2", "Coding Ratio (%)": "60.7", "Number of rRNAs": "0", "Number of tRNAs": "33", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Methanobacterium paludis", "strain": "strain=SWAN1", "accession": "GCA_000214725.1", "taxid": 868131, "species_taxid": 868131, "relation_to_type": "type", "validated": true, "ani": 94.3407, "matched_fragments": 539, "total_fragments": 713, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 76.58, "contamination": 9.9, "strain_heterogeneity": 20.0 }, "gtdb_result": [ { "accession": "GCF_000214725.1", "gtdb_species": "s__Methanobacterium_C paludis", "ani": 94.3407, "matched_fragments": 539, 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"Methanobacteria", "Methanobacteriales", "Methanobacteriaceae", "Methanobacterium", "C", "s", "", "" ], "_meo": [ { "id": "MEO_0000688", "label": "river sediment" }, { "id": "MEO_0000082", "label": "river" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }