{ "type": "genome", "identifier": "GCA_020059385.1", "organism": "Nitrospira sp.", "title": "Nitrospira sp.", "description": "derived from metagenome; fragmented assembly", "data type": "Genome sequencing and assembly", "organization": "Northwestern University", "publication": [ {} ], "properties": { "assembly_accession": "GCA_020059385.1", "bioproject": "PRJNA563685", "biosample": "SAMN18076655", "wgs_master": "JAGVCE000000000.1", "refseq_category": "na", "taxid": "70125", "species_taxid": "70125", "organism_name": "Nitrospira sp.", "infraspecific_name": "", "isolate": "WC_33", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/09/20", "asm_name": "ASM2005938v1", "submitter": "Northwestern University", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/020/059/385/GCA_020059385.1_ASM2005938v1", "excluded_from_refseq": "derived from metagenome; fragmented assembly", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-09-20", "dateModified": "2021-09-20", "datePublished": "2021-09-20", "_annotation": { "sample_count": 1, "sample_organism": [ "Nitrospira sp." ], "sample_taxid": [ "70125" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA: Sanford Underground Research Facility, Lead SD, Deep Mine Microbial Observatory (DeMMO)" ], "sample_host_location_id": [], "data_size": "0.310 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 49.26, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "1063567", "Number of Sequences": "267", "Longest Sequences (bp)": "30742", "N50 (bp)": "3840", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "55.1", "Number of CDSs": "1001", "Average Protein Length": "221.1", "Coding Ratio (%)": "62.4", "Number of rRNAs": "0", "Number of tRNAs": "6", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [], "cc_result": { "completeness": 49.26, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_005116745.1", "gtdb_species": "s__Nitrospira_F sp005116745", "ani": 96.5133, "matched_fragments": 143, "total_fragments": 217, "gtdb_taxonomy": "d__Bacteria;p__Nitrospirota;c__Nitrospiria;o__Nitrospirales;f__Nitrospiraceae;g__Nitrospira_F", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCA_005116955.1", "gtdb_species": "s__Nitrospira_F sp005116955", "ani": 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