{ "type": "genome", "identifier": "GCA_020059395.1", "organism": "Chitinophagales bacterium", "title": "Chitinophagales bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "Northwestern University", "publication": [ {} ], "properties": { "assembly_accession": "GCA_020059395.1", "bioproject": "PRJNA563685", "biosample": "SAMN18076653", "wgs_master": "JAGVCC000000000.1", "refseq_category": "na", "taxid": "2448779", "species_taxid": "2448779", "organism_name": "Chitinophagales bacterium", "infraspecific_name": "", "isolate": "WC_3", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/09/20", "asm_name": "ASM2005939v1", "submitter": "Northwestern University", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/020/059/395/GCA_020059395.1_ASM2005939v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-09-20", "dateModified": "2021-09-20", "datePublished": "2021-09-20", "_annotation": { "sample_count": 1, "sample_organism": [ "Chitinophagales bacterium" ], "sample_taxid": [ "2448779" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA: Sanford Underground Research Facility, Lead SD, Deep Mine Microbial Observatory (DeMMO)" ], "sample_host_location_id": [], "data_size": "1.035 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 91.67, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "3684031", "Number of Sequences": "498", "Longest Sequences (bp)": "53622", "N50 (bp)": "9863", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "38.5", "Number of CDSs": "2945", "Average Protein Length": "308.7", "Coding Ratio (%)": "74.0", "Number of rRNAs": "0", "Number of tRNAs": "35", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Ferruginibacter albus", "strain": "strain=KIS38-8", "accession": "GCA_020042285.1", "taxid": 2875540, "species_taxid": 2875540, "relation_to_type": "type", "validated": true, "ani": 76.2225, "matched_fragments": 83, "total_fragments": 973, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Foetidibacter luteolus", "strain": "strain=YG09", "accession": "GCA_009650435.1", "taxid": 2608880, "species_taxid": 2608880, "relation_to_type": "type", "validated": true, "ani": 75.9762, "matched_fragments": 74, "total_fragments": 973, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Niabella ginsengisoli", "strain": "strain=GR10-1", "accession": "GCA_022513635.1", "taxid": 522298, "species_taxid": 522298, "relation_to_type": "type", "validated": true, "ani": 75.9012, "matched_fragments": 50, "total_fragments": 973, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ilyomonas limi", "strain": "strain=17mud1-8", "accession": "GCA_005233845.1", "taxid": 2575867, "species_taxid": 2575867, "relation_to_type": "type", "validated": true, "ani": 75.6288, "matched_fragments": 55, "total_fragments": 973, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hydrotalea lipotrueae", "strain": "strain=TMF_100", "accession": "GCA_019249625.1", "taxid": 2803817, "species_taxid": 2803817, "relation_to_type": "type", "validated": true, "ani": 75.5386, "matched_fragments": 58, "total_fragments": 973, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Panacibacter microcysteis", "strain": "strain=DH6", 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